current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .
# Score Template Links and tools%idFirst MNPIIDGIIALEGGYVFNPKDKGGATHWGITEATARAHGYAGDMRDLTHAEAYAILEEDYWIKPGFDVISTLSWPVSFELCDAAVNIGDYHPSAWLQRWLNVFNHEGKRYPDVHVDGNIGPRTLAALEHYLAWRGQEGEAVLVKALNCSQGMYYLNVAEKNHNNEQFIYGWIKNRVTLast
1 -82.100d2ikba1 d.2.1.9 (A:1-163) Hypothetical protein NMB1012 {Neisseria meningitidis [TaxId: 487]}  ali model 3D-neighbors follow..  34  5FNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQ---MPEAVAFQFFDACVNHGYGNAARMLQRAAG-----------VPDDGVIGAVSLKAINSL-------PENDLLLRFNAERLVFYTKL----GTFTSFGKGWVRRVAQ 156
2 -74.300d2nr7a1 d.2.1.9 (A:1-192) Putative secretion activator PG0293 {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  23  4VKLLLPYILKWEGGFVHDPADAGGATNKGVTIATWKRVGYDEDLKLLTDDDVLNRLKPFYWDRWKADLI---ESQKVANILVDWVWGSGKYGIVIPQRILG-----------VQADGIVGNKTLQAVNSA-------DPDELFESIFDARREFLEDIELLRHTNKRFLRGWLNRLED 188
3 -11.100d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal domain {Streptomyces albus G [TaxId: 1962]}  ali model 3D-neighbors follow..  12  25...................................................................RVAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYG-----------LAADGIAGPATFNKIYQLQDDDCT......................................... 82
4 -10.100d4olta_ d.2.1.7 (A:) automated matches {Pseudomonas sp. [TaxId: 878476]}  ali model 3D-neighbors follow..  11  11.DTAMSLVSSFENSYLEDIADGRGYT-GGLIGQAWADAAETSEFRAAQDAERDRVY---FDPAVAQGKADGLSALGQFAYYDTLVVHGPGSQRDAFGGIRAEALSAALPPSQGGDETEY-------LEAFFDARNVIMREEPAHADTSRIDTAQRVFLQNGN............... 217
5 -9.750d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  11  45.MSMAEMLRRDEGLRLKVYWDTEGYPTIGIGHLIMKQPVRDMAQGSITMEEATTLFERDLADMQRGPVWQAVNRSRQMALENMAFQMGVGGVAKF-NTMLTAMLA--------------GDWEKAYKAGRDSLWYQQTKGRASRVTMIILTGNLESYGVEVKT.............. 216
6 -9.570d3f8va_ d.2.1.3 (A:) Phage T4 lysozyme {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  18  2..NIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSVITKDEAEKLFNQDVDAAVR-PVYDSLDAVRHCALINMVFQMGETGVAGFSLRMLQQ........................................................................... 123
7 -7.930d2wkxa1 a.20.1.1 (A:180-261) Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  1........................................................................PDAQRVNFYLAGRAPHTPVDTASLLELLARYGYDQMHFRPTLYNGEADAETQAIAEALLEK............................................ 78
8 -7.540d1qgia_ d.2.1.7 (A:) Endochitosanase {Bacillus circulans [TaxId: 1397]}  ali model 3D-neighbors follow..  13  27.NNIMKLINKPEQDYCEDIEDERGYT-IGLFGGKIKKLQNDAAWRKAMWETFYNVY---IRYSVEQARQRGFTSAVTISFVDTALNQGATGGSDTLQGLLARSGSSS------------------------------NEKTFMKNFHAKRTLVVDTNKYNKPPNGKNRVKQWDTLVD 237
9 -7.070d1xjua1 d.2.1.3 (A:29-185) Endolysin Lyz {Bacteriophage P1 [TaxId: 10678]}  ali model 3D-neighbors follow..  10  4.QAGLELIGNAEGCRRDPYMCPAGTDGIGNTHGVTPG-------VRKTDQQIAADWEKN---------ILIAERCINQHFRGKDMPDNAFSA--MTSAAFNMGCNSLRTYYSKARGMRVETSIHKWAQKGEWVNMCNH----LPDFVNSNGVPLRGLKIRREKERQCLTGLVNE... 157
10 -6.660d2oewa_ a.118.8.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  112..........................................ALASLGYEKSCVLF-----------NCAALASQIAAE--NLDNDEGLKIAAKHYQFASGAFLHLSALSREPTVD--ISPDTVGTLSLIMLAQAQEMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVL.. 245

FFAS is supported by the NIH grant R01-GM087218-01
1 2 5 9 7 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;