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Query: gi|16763394|ref|NP_459009.1| threonine synthase (STM0004) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-428), from S.typhimurium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKLYNLKDHNEQVSFAQAVTQGLGKQQGLFFPHDLPEFSLTEIDEMLNQDFVSRSAKILSAFIGDEIPQQILEERVRAAFAFPAPVAQVESDVGCLELFHGPTLAFKDFGGRFMAQMLTHISGDKPVTILTATSGDTGAAVAHAFYGLENVRVVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKTALGLNSANSINISRLLAQICYYFEAVAQLPQGARNQLVISVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGKWAPKATQATLSNAMDVSQPNNWPRVEELFRRKIWRLTELGYAAVDDTTTQQTMRELKAKGYISEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVESILGETLALPEALAERADLPLLSHHLPADFAALRKLMMTRQLast
1 -2.300PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  107......................................................................................................AIMFEDT-LIIHVKNTASNHAYQHPTETWQTIEIQPIALGSTKTIKLGCI---LSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYASYDMVNKENMPYGLAVSNGNGTF------------SYPQEK-NSLFETYPGFSDWINGK.............................................................................................................................................. 290
2 -2.280HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  17  3........................................................................................................KFNYKRLIVMLVVVLAITCLMATTAFAAGTGDVAGAVESTWSTASTVVDNVVFPAIDLILA---FFAKLGTAYFEYRKSGQFEWAAPAI........................................................................................................................................................................................................................................... 94
3 -1.730HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  15  2............................................................................................................RGRIVRLRGARAPLGRGRGAASGALSDERGAGTVLVVGVIAVL-ALGVSGLIQAQAAAGRSLAALGGATALSSIVAPGDPCEAASRVARAN..................................................................................................................................................................................................................................... 99
4 -1.690PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  11  1.........................................................................................................MKIKFLSFIASFFMVSFVITSCLDDDNNIEYSPDATIHAFAGLGSYKFTI-LPVHADTIIDKILIKTLTTASGVVTMKDKSGN--DSVININDSIDLREPLTIKVWSTEALAGISPNQTKEYTIKVNVHQHDPDSLRWNHVGKMQDEIIGEQKTIEFNNKILTYSVVEGKNLKVYQNSNYSNWTAAGTNTTGDLTSTLPNSILPLNGIILATA-----NNKVYESTDGVAWTISDK----------FSGNVKTFISKIPVDTDTKITYIKTEDGKQYIYSILES....................................... 282
5 -1.680PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  1.........................................................................................................MKIERLFIYCLLA-------GTSLLASCNSEDMTDNPVETLSEGMYP--LTFTAMQGEVVATPQTRVSDYDDTDGKHKSKWDGGEVIGVKIGTD---GAVGSYTLDSDGKPTTSTSNIPAYWQ------------------STASQTVYGWY-------PNTADISLTGQDN--GNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNLSDAKVFFYGYPTCKNEYGTVIPQGAMLAPDTKTS....................................................................... 229
6 -1.610HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  13  1....................................................................................................................MFEYILREIFLSVIAFLAGAGVSAGVFAF-----VLVIGVVP--RILRCSRIENIILIENVMICGV------------------------------------VAGNISSVLDTAYNLGFANMPKVPVSNICGNII-IYGLCVGIFVGCIAVALAEILHTFPIIYK-----RMKLRAGLGIIVISMAIGKALG........................................................................................................................ 145
7 -1.550HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  10  4..............................................................................................................................................GDFVKLSNLTIGYTLPIRNNKYMKSLRVYVSGNNLFCITGYSGLDPELDISNVQAPGVEYRDTYPTTRSFTFG..................................................................................................................................................................................................................... 76
8 -1.500PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  36...........................................................................................................................................................................................................................................................................................................................................TPEQMMQMQTNQMVRALMLDDATAAKFTPIYEKYLKELRECRMMNFKPRARKDAAQGT--TDAEIAKMLKDQFAQSRKMLDIREKYNEFSKILSQKQ 144
9 -1.350HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  10  29...........................................................................................................................................................................................................................................................................................................................................DEDDMAKSTKTYEERIRALEKKEQESIEATKKLIAQRKELE--------KKAEESKKRTHRLCQIGGAVESVLGCPIE----EEDLPKLIGFLKRQE 115
10 -1.270PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  13  9....................................................................................................GRPGLFEVHTQTRTGVVATSLVDGKRINANARNQ----------VSLLSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSDIKKIIQWYNILAEK............................................................................................................................................................................................................. 121

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 1 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.