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Query: gi|16763395|ref|NP_459010.1| hypothetical protein (STM0005) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-257), from S.typhimurium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLILISPAKTLDYQSPLATTRYTQPELLDHSQQLIQQARQLSAPQISRLMGISDKLADLNATRFHDWQPHFTPDNARQAILAFKGDVYTGLQAETFNDADFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENPRGKDLYQFWGDIITDKLNEALEAQGDRVVVNLASEEYFKSVKPKKLNAELIKPVFLDEKNGKFKVVSFYAKKARGLMSRFIIENRLTKPEQLTAFDREGYFFDEETSTQDELVFKRYEQLast
1 -3.730PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  11  2...............................HNFKEKIQFSKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCFGKFAIVKKVYEVNDGFNIGSGLLAKFIKTLVMYFSILYFVGFFFDLI-----------------NLIEFWEYDENGKYVKAYEENGEKLLLSYSDFGKRLDIQFAKEGNSQNLIVFRAEPG-------KFFVEKDGKLEEIVVSSETVGSKTILKMAEQGKLKSTKVVDTKTLNDLEAK. 215
2 -2.240PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  12  1..................................................................MTLIKGEPGKGIVLKEY-GKNIQKIVDWILTIEDREQRTRYANTCVELMRQLNPG-IMSNFKLDVDTPYPMPDIAVLYKHYGKNINLLIEQAILKEDGAYLGRLMKRLYST-WNKENVDDEVIVEHLSELSKNNLQI...................................................... 172
3 -2.150PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  13  14FLGSQMTLSAQNEENKERKQRPTPEQMMQMQTNQMVRALMLDDATAAKFTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKE----PKPVMTDAEIAKMLKDQFAQS------KMLDIREKYYNEFSKILSQKQIMKIYQQ-EKSNMNKFRKEFDRRKGQ............................................................................................ 169
4 -2.120HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  17  16..........................FDRAVNAQRSQLLTVMADAVSECRTAADQAAELNETGQVGLLRLAEVWSAIRAKEGMGGLILEGTEAKILSD-----------VVAQFYAYLSGCMFNDPVGMAIYAELHYMMSSLMLGEW.............................................................................................................. 125
5 -1.950HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  115.................................................................................AYTQIFLENITDCPMEESKKEQWSAEVKCLRAYLNLAFYYTDVP-----PLKTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRG.................................................................................... 209
6 -1.950HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  15  9...............................DELLERIRDIRASEKRVYRKVKEIFA-----------LSVDYDSKSQVAQSFFKSVQNKLEYAATGHTAPELIAKRADASKDNMGLISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLRENFGTVKREVAEKLALEQYEQ................................................................................ 174
7 -1.870HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  1...................................................MFEYILREIFLSVIAFLAGAGVSAGVFAFVLVIGVV----RILRCSRIENIILIENVMICGVVAGNI-----SSVLDTAYNLGFANMPKVPV-----SNICGNIIIAIYGLCVGIFVGCIAVALAEILHT-----PIIYKRMKLRAGLGIIVISMAIGKALGALYYFLTG.................................... 153
8 -1.780HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  11  35.........................................ENGKSRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGERLGRL--------LKLAVEHNM.......................................................................................................................... 121
9 -1.680PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  14  2.............................ATQAIDATIFASSHPDIAKRTSISGLLIS--------------------CVMLLIGILSFASTFELEDKSS------TVSMALMVFGTGLFLLGIFRLFWKSKEVVYVPTGSIAKEFFDLKHMDKLTDLVNSGSFSADSKIKSEASGNILSADNKFAAVQLFQFVPYTYQPVTAVHYFTNDAAAAVAAFLTKSQL................................. 178
10 -1.650PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  14  48..............................KKELIRQLDIAEANHCLSFEQVSDEIIEYFNIQEGDFHTVESCKYNVPSVQAI-GKVYHRLIISIISEQD-NLVDVLFEVFNSFI-----SDEISDFNSSV.............................................................................................................................. 141

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 1 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.