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Query: gi|16763396|ref|NP_459011.1| alanine/glycine transport protein (STM0006) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-476), from S.typhimurium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPEFFSFINEILWGSVMIYLLLGAGCWFTWRTGFIQFRYIRQFSRSLKGSLSPQPGGLTSFQALCTSLAARIGSGNLAGVALAIAAGGPGAVFWMWVSAIIGMATSFAECSLAQLYKERDPTGQFRGGPAWYMARGLGMRWMGVVFALFLLVAYGLIFNSVQANAVSRALHFAFNIPPLISGIALAFCALLIIIRGIKGVARLMQWLIPLIALLWVAGSVFICLWHIEQMPGVIASIVKSAFGWQEAAAGAAGYTLTQAITSGFQRGMFSNEAGMGSTPNAAAAATSYPPHPVAQGIVQMIGVFSDTIIICTASAMIILLAGNHASHSSTEGIQLLQHAMVSLTGEWGASFVALIVILFAFSSIVANYIYAENNLFFLRLHNAKAIWLLRLATLGMVIAGTLISFPLIWQLADMIMACMAITNLTAILLLSPVVYTLASDYLRQRKLGVRPQFDPRRFPDIEPQLAPDTWEAASRDLast
1 -3.610HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  11  6...................................................................................................................................................................................................................................................................VSHQLKK--LNNSSSLTKKNM--TMEENTVHPARKLLLGQLIAYLLQAVAVVVGFESDLLEVGACAEDVFVKYQMLMLMEVLTIC------FIPMALKMFSLSAV-----------RRLKADRVRGLVLFGSCRLAMIGVPLVANTILYYMSMSVAYGYMAIIGGLCFTFVYPSIGRCINE.................................... 166
2 -2.390PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  87............................SIKSKSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKLIEDILQRSFQR...................................................................................................................................................................................................................................................................................................................................................................... 188
3 -2.080PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  10  37.............................................................................................................................................................................................................SLTMTAGLILSLLGPAYLVFFADLQITAGMVWVAFLAVAAIFGVLWFVEPLTYFPILGSAAMYQAFMIGNISNKLVPAAIVAQSSIGAKAGLAAVMAIGGAATMHLLSLLIFVGFLGTWLVS-----------------------LVPVEVIEVARLYIM--SLMGAVLVQAIVSMRNVRATVVALGLAVVIQL-------LVVPAFPQLGMFATAVVVISSIIINWVVRDRRGQVTIQSEAAPEP......................... 256
4 -1.960PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  10  42....................................................SDFVDLASRDAVDKTLQRLTKAEALRRID-------RGLYDQPGFNKLTQKPNPPDPRSVIDAVGRRDQTRMLVDGMTAANDLGLTDA-----VPAKIVVHTDARRRAIKLGNATITFRPTAASKLFWAGRPAMRVVQALHWLRDLLVRDGESEQIQRKLAKLFEDPAV-LAAGMTALPTWMLVFLKPLIETDPDDRGQHPDNVHAAAD------DRQRHDKAGDDDHHKTIRAQSNPKPHSS..................................................................................................................................................................................... 273
5 -1.900HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali follow..  11  37...........................................................................................................................................................................................................................CITILQNDHVLADAIRL---NLLSERIDIGKTLNDTDMKYILRRMEKYGISSEKKIESA--IRIVGNENPYHPIRD--------YLNGL........................................................................................................................................................................ 121
6 -1.860PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  13  28...............................................................................................................................................................................................................................................SLFQHLIDSNGIVDEAVLEKLKLNI-RSLIASQEEDSKDLLDLCIDVIYHNNMKAFGLQQLIKLYLT.......................................................................................................................................................................... 93
7 -1.830PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  22  13.....................................................NPEDIESQTILKDAAATALGSRGANGVVLITTKSGRRGKTHIAFTAEYGTSDF.................................................................................................................................................................................................................................................................................................................................................................................. 66
8 -1.820PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  10  53............................PFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKN-GAGCVIAEDHGAGEVIWL-VQSLVDGQLGAPFVWPLVANAGESPGGDYIKVPMPYRRS-VDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELQTIAESTGPASISALRLYLPAPADQSLTGLRLRIEFDGRTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALARVSLANTGAGPVFGIAAEVTTTPDARWAGA..................................................................................................................................................................................... 382
9 -1.810PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  10  1....................................MDTIDNFLDAMFAPYPASTRLTDAKVELRAMMEDAYGMTHNEAVGRVITDFGN-------IAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPR-----------------------TLPEAQELAEARRRGAASLGLSVAILVSTGIPLFAFRGLSEFNEDTATFLALAVDLPLVALGVIMLLTRSRLFTNVKHLVDLEFTPDPIVTAWAARLRLE-------EDRRMRRLAIA-------------------------------VGLWICAALPLAVVQALPPIGVGMGVPAGADNGTLNGGDLSELALALSVVLVAQQTLIRDGRQEYNEENYRDPVIGIVASVYWPCVIVAYFVWGAVFNQVLFPISGLLFGVFA........................................................ 354
10 -1.750HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  1...............................................MDEKEVSEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQ-------------QAVGGDIEMTYPFDDEVGILLNGNGKFEGLPLNRALYDDHGQVYDAIAGTFLVVGLTEDDFTSLTPEQIEKFKEKYQSPEIFT....................................................................................................................................................................................................................................................................................................... 121

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.