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Query: gi|16763400|ref|NP_459015.1| hypothetical protein (STM0010) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-237), from S.typhimurium

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNVTYLHDEDLDFLQHCSEEQLADFARLLTHNEKGKARLSSVLSHNELFKAMEGHPEQHRRNWQLIAGEFQHYGGDSIANKLRGHGKQYRAILLDVAKRLKLKADKSMSTFEIEQQLLEHFLRHTWQKMDAAHKQEFLQAVDAKVSELEELLPLLMKDRSLAKGVSHLLSTQLTRILRTHAAMSILGHGLLRGAGLGGPVGAALNGVKAMSGSAYRVTIPAVLQIACLRRMMAAVQALast
1 -5.560PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  1MTLIKGEPGKGIVLKE---KNIQKIVDWILTIEDREQRTRYANTCVELMRQLNPGVRDTEEHTTKLWDHLFIMSNFKL-DVDTPYPMPDIAVLGRKPERV--PYNHNKLKYKHYGKNINLLIEQAILKEDGAEKEDAIIYL................................................................................................ 137
2 -4.590PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  11  230......................................IDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVYVEQK-NFSKAK-QAYRILSLKYPEKSGIRAIEKLQ........................................................................................................................ 311
3 -3.890PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  151...................................................................................ASGSSFEDIAVHTIWKESPSDEEMRHAGKVMTEL-TELFTRITERLTDEAMSERLAKA................................................................................................ 211
4 -3.430PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  10  151...................................................................................ASGSAFEDIAVRTIKKDSPSEAEMRHAGKVMTEL-TELYSRITERLTDEPMSERLAKA................................................................................................ 211
5 -3.360PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  127.......PAVDAVSRVVTPDDLDNAGNVLFKLNDADKDEEKSLRAALTLHTIRE-----TDLFEIFSSQVE--NKNVIDSLM-------GKYLDGNGNPLSVRKTKSVVPVSDG........................................................................................................................... 219
6 -3.310HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  30....IQPDRMENIL------DYH-LSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAE-------FDSSMVWYTRHT----------ELASLYKKLGERFRSEKKHMQELLALRENKPAVSLPGDTVDVWYDRKLYWLTD................................................................................................. 143
7 -3.170PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  30...GLLHD-----MSKYSPTEFLVGCRYYKGYMSPNNAERADRGYSSAWLHHKGRNKHHLEYWIDYAVSKPGDDKTH----MEGMKMPIRYVCEMFIDRVSASKNYQKEKYTDKSALTKAMLEYLLVMLSVKGEEYTYSYIKKE............................................................................................. 178
8 -3.060PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  295LNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDL-GKALSHCV--GGSNYKQHIEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAAN............................................................................................... 437
9 -2.990PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  11  2........TETQFKVQAEQQRLEAVTAQVADVEQSLEKTKAAAEKQKKKLEALQKETKAARATALTVQDIEAMGKKATFNNITLTPDECRT-LKDYAVS---SFAEKAEKLKYKQKY........................................................................................................................ 107
10 -2.950PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  1MKIE-----GTSLLASCNSEDMTDNPVETLSEGMYPLTFTAMQGEVVATPQTRVSDYDDTD-----KHKSKWDGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYGWYPNTADSLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEHQLVKFRVKLNGPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLPDTK.............. 227

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 8 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;