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Query: gi|16763409|ref|NP_459024.1| hydroxymethyltransferase (STM0019) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-998), from S.typhimurium

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTISIHASAFDVNSWYQKITLTFINESGNAVDMNHAAISFTASGHIDPWGNSGGTLKGNLPLTLNESSYGTLETNNIIINNSDALLLQPGERGTLSFSLAATQVPVKMSAITLTLASSSSEDAESATPSDQETPAIPAADEQPAEPDVPEKDNDLQEHGLTLNVSELNTASWYQRVTFTLTNLYAQAVDLNQLQLNFTASAHPDPYSPFQGTMLGNQAVTLASDGGWPIEKNTITINHDGALILAAGDTAELQCYLAATQTPVAISDLNATLAHDPARQGKVCVHFPAMTQTVALKPVIELLFPAGETRRFVGEWGEVLTIGDLSAGTYRLTVPVLANDEMQIAPVESSFTVTLQSGDAAAQVQVSCLPIVRYASARLMIDAPALGNAKLTVEIADATQADERTVTLIANQPQLITRLLAGHHYTVNLQPAMINNRFISAPIQLTGFIPAAAQIAEVAVAYQQSALDTASFVTVDATILGLPDGVAPQRYLFSSGKYQYSLMLESGSDRQTLALRFAPGLYDVQTDDIFIDSVPWRCEQAGPLRLLQKVNHVALEFLPGVTLQVKGWPDYLAHGGVTVNAPETVSLYRDIPFSALFKYDGFDGGGDPVPAAEVDVNGDGFLDYATLPIHKTVALVRQIEKEAGRSVMPVMVIYTANASGGSALADLQDAQKLRNHFGNFITQCLAAQSYKDETHPVPATFVLNPDFLGALQQGPYGYTVVRQKNSVPVNAQLAAAIQALPAMAGFIAPSLPTFSDDLYGYIQAVNYLVRQFAPDVAFGWQTNVWATGTADWVLRDTADPVAEGQAIAGFIHELGVYSGEYAPDFIAFDKFECDCFSPDALAHYGWNATCWLNYLAMVKQVTKALLTPAMLWQIPGGHMPTVEEGVSKISAAHFASGGTFFMGDARIGSDPDTLSLQLLNTALNSATYGVPTVGDFLRKDKGYDWGQMQALNLPDFNVFSILWGGGSTISITTIHSNGEDGGWLADKMVEYYAAPRYFRLast
1 -10.100sp|A6NHR9|SMHD1_HUMAN Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Homo sapiens GN=SMCHD1 PE=1 SV=2 (Range: 471-1300)  ali follow..  10  370.PFNIPLEFQDEFG-----TSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGKNYNLKVTLPGLKEDSQIKIRLLPGHPRRLKVKPDSEILVIENGAFPFQV---EVLDESDNITAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIEVNWIAGDIMHNLIFQMYDEGEREINITSALAEKIKVNWTPEINKEHLLQVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVGLDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPEL---KESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKI......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 830
2 -7.560sp|Q9BU19|ZN692_HUMAN Zinc finger protein 692 OS=Homo sapiens GN=ZNF692 PE=1 SV=1 (Range: 29-120)  ali follow..  12  1......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IRLGGHMEQW----------------------CLLKERLGFSLHSQLAKFL-LDRYTSSGCVLCAGPE---PPKGLQYLVLLSHAHSRECSLPGLVWECSAGH......................................................................................................................... 90
3 -5.340sp|Q9H2P0|ADNP_HUMAN Activity-dependent neuroprotector homeobox protein OS=Homo sapiens GN=ADNP PE=1 SV=1 (Range: 1-73)  ali follow..  13  1.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MFQLPVNNLGSLRKARKTVKK---------ILSD-----------------------IGLEYCKEHIEDFKQFEPNDFYLKNTTWEDVGL------------------------LTKNQDYRTKP.... 73
4 -5.000sp|Q5JUQ0|FA78A_HUMAN Protein FAM78A OS=Homo sapiens GN=FAM78A PE=2 SV=1 (Range: 1-226)  ali follow..  11  17......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LLYAMGCIQSIGGKARVFREGITV--------IDVKASIDPVPTSIDESSSVVLRYRTPHFRASAQVVMPPIPKKETWVVGWIQACSHFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTETCTIVGPTKRDSKFIISMNDNF--AVPVSESNVAKLTNIYRDQSFTTWLVATNTSTNDMIILWRMPLG.......................................................................................................................... 226
5 -4.740sp|Q6P9G0|CB5D1_HUMAN Cytochrome b5 domain-containing protein 1 OS=Homo sapiens GN=CYB5D1 PE=2 SV=1 (Range: 90-228)  ali follow..  11  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LRYCTPRGRFVHVPPQLPCSDWAWQGS--YYEVGRLSAKTRSIRIINTLTSQEHTLEVGVLESIWEILHRYLPYNSHAASYTEGKNLNMDFTLEENGIRDEEEEFDYLSMDGTLHTPAILLYFNDDLT.. 137
6 -4.720sp|Q9H0A9|CU056_HUMAN Uncharacterized protein C21orf56 OS=Homo sapiens GN=C21orf56 PE=2 SV=3 (Range: 191-340)  ali follow..  11  9.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IAFQLDRRILAYVFPGVTRLYGFTVAN---IPEKIEQTSTKSLDGS----------ERKLRELTQRYLALSARLEK---LGYSINTYGI-----LKQRPDLRANPLHSSPAALRKLDVVPPKFLGDSLLL--------------------------LNCLCELSKEDGKPLFAW............................................................................................................................... 150
7 -4.630sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 (Range: 363-479)  ali follow..  10  1....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PKLNFVFGVNIEHRDLDGMFIYNCSRLIKMYEKVGPQLEGGGVVGTHNKQDFADAKEYRHLLRAMGEHLAQYWKDIAIAQ----IIKFWDEFGYLSANWQPP............................................................................................................................ 117
8 -4.600sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF PE=1 SV=3 (Range: 833-976)  ali follow..  16  65..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GSKVLTISTLRLTITQLENNI-PSSFLH---PNWASHRANWIKA-----VQMCSKPREFALALAILECAVKPVVMLPI------------------------------------------WRESLGHTR....................................................................................................................... 142
9 -4.580sp|Q5VT40|FA78B_HUMAN Protein FAM78B OS=Homo sapiens GN=FAM78B PE=2 SV=1 (Range: 1-210)  ali follow..  12  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MGCIQS-CATIDQCPTRIEETSPIVLRYKTPYFKASARVVMPPIPRHETWVVGWIQACNQFFNTYSDLGMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKISRFSVSMNDNFY-AVPVSDSNVPLLTRIKRDQSFTTWLVAMNTTTKEKIILWRMLLGQ......................................................................................................................... 207
10 -4.550sp|P01266|THYG_HUMAN Thyroglobulin OS=Homo sapiens GN=TG PE=1 SV=5 (Range: 777-895)  ali follow..  14  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PEQVFELY-QRWEAQNK-----------GQDLTPAKLLVKIMSYREAASGNFSLF-----QSLYEAGQQDVFPVLSQYPSLQDVPLAALEGLLEPYLFWQILNGQLSQYPGSYSDFST............................................................................................................ 112

FFAS is supported by the NIH grant R01-GM087218-01
1 2 4 1 8 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.