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Query: gi|16763407|ref|NP_459022.1| hypothetical protein (STM0017) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] (Range: 1-147), from S.typhimurium

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTYIINSNCIYNEGKYELRTVSNSQVIKMTAMRAKCLSFIIENAHLEIIERQKITTALWGSRSHYVNDANLTQILYLIRRDLKALGINDLFITIPRQGLKVNSDITIIATDSETKGRKKQIVRQTIAALTTVFSVTLGSLMYLHIHLast
1 -42.900[K] COG3710 DNA-binding winged-HTH domains  ali follow..  15  18.TKFILAEKFTFDPLSNTLIDKESEEIIRLGSNESRILWLLAQRPN-EVISRNDLHDFVWREQGFEVDDSSLTQAISTLRKMLKDSTSPQYVKTVPKRGYQLIARVETVEEEMARESEAAHDISQPESVNEYAESSSVPS....... 157
2 -19.600[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain  ali follow..  15  140.......GEWTFDVQRRALS--RNGEPVKLTKAEYELLVALSSYPN-QVLSRERILNMISH-RVDAPNDRTIDVLIRRMRAKMEDPKNPQIFVTVHGEGYMFAGD.......................................... 234
3 -17.000[T] COG3629 DNA-binding transcriptional activator of the SARP family  ali follow..  10  7................GPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYICNLRRTLSDAGVDNILVSEPP-GYRL............................................. 93
4 -15.100[T] COG3947 Response regulator containing CheY-like receiver and SARP domains  ali follow..  16  118..............................TAKARELFAYLVQHRK-QPVRKDVLLEFFWPESDVKKGYAQLYSAIYQIRKMLDSLQMNSTVVS--DKSYKLHLN.......................................... 190
5 -7.820[S] COG3236 Uncharacterized protein conserved in bacteria  ali follow..  18  111.....................................LRALLLATAPAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQLAI.............................................................. 158
6 -7.280[L] KOG0981 DNA topoisomerase I  ali follow..  209...........YEPLPKNVKLIYDGNPVNLPPEAEEVAGFYAAMLETDHAKNPVFQDNFFRD----------------FLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDEEEEK............ 316
7 -6.770[U] KOG3317 Translocon-associated complex TRAP, beta subunit  ali follow..  52............DETRARLLVSKQILNKYLVEKSDLLVRYTIFNVGSGAATKVRLVDSGFHPEAFDVVGGQPTAVVDRIAP--QTNFTHVLVVRPKAFGYFNFTAAEVSYKAVEESETLQLAVSSEP.................... 164
8 -6.760[K] COG1802 Transcriptional regulators  ali follow..  24  22...................................................RQAIMSGRFTP-GERLIERELCETLGVIREALRRLEAEKLVSIVPHKGPIVAI........................................... 77
9 -6.750[K] COG1654 Biotin operon repressor  ali follow..  18  1...........................MKDTTVPLTLISLL---ADGEFHSGEQLGERL-------MSRAAINKHIQTLRDW---------VFTVPGKGYSLPEPIQLLDADR.................................. 71
10 -6.580[K] COG2771 DNA-binding HTH domain-containing proteins  ali follow..  10  174......................LMSNPVCLSHREREILQ--------------------WTADGLSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGL............................................... 240

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Database searching by flexible protein structure alignment. Protein Sci. 2004 Jul;13(7):1841-50.