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Query: d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}, from SCOP207

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EQWQTLYEAIGGEETVAKLVEAFYRRVAAHPDLRPIFPDDLTETAHKQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHMVNTPDHLDLast
1 -3.790PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  14  135.RETELKESFVPTDSISQAIHFFSDRAFRRKQLQLVYFNDIDSVYPLFLCLLMAFSA-PDTWEHFYFNPTLSPFKVPFILSVFLLSIWLFLIVAVLDDLFRQLTPAAAVFYLLGLMSSCIF....... 284
2 -3.400PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  10  67.EGDNALKNVAGSLAATEAEKKMKEYCAKVGIVEGVFNYVFNSDSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVSTLTAHVVLSGNELTLL------ADKLLKFLSTVSSISSNTT.... 185
3 -3.340PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  17  267ETLARVYVE---QKNFSKAKQAYRILSLKYPEKSGFFADQIRAIEKLQ................................................................................ 311
4 -3.300PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  14  6.............KSIRKTMWGVYWKLHDVERLKGYLDGLPPETCRRIVLGMLAAFAVLALYTGRNDGSRMETGH..................................................... 80
5 -3.230PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  10  25......YEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYFAIYEALAAWW........................................................................ 74
6 -2.980PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  52...........DGKNIESVLMQHIEKVEEAQVEVEKVHKRLDIINNRMSFCIQKVMGSDLSYSENNNGMIITGIY-----GRSETVTYAKPVKDGKSNYSLSVEELQALQRAKENTIDTLELQGFRSK 178
7 -2.710HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  10  113...GNAYTQIAKYNTFLENITD----CPMEESKKEQWSAEVKCLRAYFFLNLAFYYTDVPMPLKTLSVDE--ANSISQTPQTEVYSQVEKDLKTAIDLL............................. 202
8 -2.630HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  11  32NELEDLQQAVGGDIEMTYPFDDEVGILLNGN--GKFEGLPLNRALYDDHGQVYDAIAGTFLVVGLTEDDFT-------SLTPEQIEKFKEKYQSP................................. 117
9 -2.610PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  83RLLHLVASSVDGSRDIETIAHRVFGREVSADNVRYLIEQKLDPL.................................................................................... 129
10 -2.610PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  12  72.....................VYYD----DEELDRYAGVLPEEYNTEAVEEFEEIL---------------------STLQEEEVPSWIRSLQ--MRQIQMPISIKEQALFIVSEHRIQ......... 142

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.