current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170
# Score Template Links and tools%idFirst EELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATTPPATLPSSLast
1 -5.940PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  255EDRFQPSDSLMTETLARVEQKNFSKAKQAYRILSLKYPEKSGFFA--DQIRAIEKLQEN................................................................................................................. 313
2 -3.890PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  10  5.............................FGYLFLDRPPY--------------QVLASSAITYEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYFA----------IYEALAAWWEARGLLRRGHSQRDLFNHLASFAIHLARG.................... 103
3 -3.880PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  10  38EQMMQMQTNQMVRALMLDDATAAKF-----------TPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTD-AEIAKMLKDQFAQSRKMLDIREKYYNEFSKILIYQQEKSNMNKFRKEFDR....................................... 165
4 -3.670PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]  ali follow..  127YTYPDIGVRIAHKNFTVLDKYLKSVGTKLL---YVQAPYKVNRDN-----NQLPYGLKDYPNKNADKLLEGLNKLKIDYID----FREVFANNFLDYPSLFFNTDHHWTTEAAFFYQYMLDYMEKNYE............................................ 243
5 -3.460HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  21  1........................................................................MSKKKRGEERMKEEDNILKKVGKKN---FKVPEGYFENLTSEVMGKLPE................................................... 47
6 -3.220HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  13  2DMTDNNDDVLVKKFFSENRIDVPDDG--FSRRVMRRLPDRTRRISRL............................................................................................................................. 46
7 -2.940PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  12  6...........................NFLDAMFAPYPASTRL-TDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLG................................................................................. 68
8 -2.930HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;  ali follow..  2LNFHSKKVMCIQQ--------------EIYARMI--------MYNFVQMITSHVVIVKKQRKHTYKANFSVATHMCRLFYREKTTSPNLETIIAK............................................................................. 74
9 -2.920PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  10  23QESAEFRPAELAGIWQLCHYVSEIPDVPG-----LKPSNTFKVLSDDGRIVNFTMIPGKDAIITGYGTY--QQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLK---YFIAKDLNGNELNTWFHETWKRV.................................. 151
10 -2.860PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  117...NEHIQEIIETGFDWLITPQKIATMNTLYLFGLENDWVHP---ELKHLIETKIIHESKGTKARGKHILNLIEKHQKS............................................................................................. 193

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 9 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.