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Query: d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}, from SCOP207

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VEWTDKERSIISDIFSHMDYDDIGPKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAAHGIKVLHGLDRGMKNMDNIADAYTDLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAAVVSALGKQYHLast
1 -5.620PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  12  258...FQPSDSLMTETLARVYVEQ-AKQAYRILSLKYPEKSGFFAD--QIRAIEKLQEN......................................................................................... 313
2 -3.780HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  18  1...................................................................MSKKKRGEERMKEEDNILKKVGKKNS--FKVPEGYFENLTSEVMGKLPEK............................. 48
3 -3.680HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  16.....DELGLSAQAARNLYAGKANAQVVNYLLE-SPR----FLDLTYILEQYFNDTVAAGYAAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSVYQADLVTIENQFMLAVKE-VKKEIGNDFAAMQSMTAEAAKRMFTE... 147
4 -3.520PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  12  117...NEHIQEIIETGFDWLITPQYTMNTLYLFGLENDWVHPELKHLIETKIIH---ESKGTKARGKHILNLIEKHQKS..................................................................... 193
5 -3.350PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  26...AEFRPAELAGIWQLCHYVSEIPD--VPGILKPSNTFKVLSDDGRIVNFTMIPGKDAIITGGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLK---YFIAKDLNGNELNTWFHETWKRV............. 151
6 -3.280PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  12  52LMLDDATAAKF-----------------------TPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDIAKMLKDQFAQSRKMLDIREKYYNEFSKILIYQQEKSNMNKFRKEFDR.................. 165
7 -3.130PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  11  110..........LGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAERSKTLWALNDQLSDFSRKLHLL------YLSIRYYTFNDVWNNVTAGMLDRDNGEAARMALSHWHRAAALV......... 230
8 -3.030PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  1MKLSQQSLSTIESAIQKAAGKYVCGCDQTAVTDIHLQPDQTSGQLTIYNDDDEELANVMIDDFMENVKPNLKSTLCRMKD-AGDFDKVTILKPYSFVLVDEDKETVAELLLLLVDDELLKGLDKELDEFLKNLLE........... 147
9 -2.890HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  20  1MDMTDNDDVLVKKFFSENRIDVPDDGFSRRVMRRLPDRTRRISRL..................................................................................................... 46
10 -2.720HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  30..IQPDRMENILYDYHLSISNYQKEAYKNYVFEKHHITEAEFDS-----------SMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRENKPAVSLP............................................. 126

FFAS is supported by the NIH grant R01-GM087218-01
1 2 6 4 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.