current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]}, from SCOP207

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst LSADQISTVQASFDKVKGDPVGILYAVFKADPSIMAKFTQFAGKDLESIKGTAPFETHANRIVGFFSKIIGELPNIEADVNTFVASHKPRGVTHDQLNNFRAGFVSYMKAHTDFAGAEAAWGATLDTFFGMIFSKMLast
1 -43.200PF00042.22; GLB8_CHITH/9-115; Globin  ali follow..  50  1....QLALFKSSWNTVKHNEVDILYAVFKANPDIQAKFPQFAGKDLDSIKDSADFAVHSGRIVGFFSEVIGLIGNLKTLIDGLASSHKARGIEKAQFEEFRASLV............................... 107
2 -11.000PF11563.8; F0XJU9_GROCL/20-199; Protoglobin  ali follow..  14FSSTDIDHLVAGAKYIKVLIPAVTNIVYRQYDITARAFETRSTSFEGPAEDSPQILHRKMFLRAYLARLCSD-MTFWEYLDKVGMMHVGLGRAHPLHSLIQDVLTEAVLSHPRLSGLVKALGKVIWIQNDLFAKW. 173
3 -9.160PF01152.21; Q7CX73_AGRFC/7-127; Bacterial-like globin  ali follow..  16....................TRRFYELMDTLPEAARCRAI----------HPADLSGSEAKFYDYLTGYLGGPPVYVEK-PMLRRRHFVAPIGPAERDEWLLCFRRAMDETIENAKLREIIWAPVERLAFHMQN.. 121
4 -7.950PF05044.12; PROX1_CHICK/578-731; Homeo-prospero domain  ali follow..  11  2LSPNHLKKAKLMFFYTRYPSSNMLKTYFSDTSQLIKWFSNFREFYYIQMEKYAR-QAINDGVTSTEELSITRDCELYRALNMHYNKANDFEVPERFLEVAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLDSEV 143
5 -6.860PF06021.11; F7BVP0_HORSE/2-206; Aralkyl acyl-CoA:amino acid N-acyltransferase  ali follow..  172LDVTHAALVNKFWH--NERSQRFIERCIRNFPN....................................................................................................... 205
6 -6.850PF03556.15; H3F2H7_PRIPA/93-203; Cullin binding  ali follow..  15  9...........................LDQGLRDPVGFELVYKFAFGYGKRPGSRNLDLDYAIPFWRILFKNEYSLLPLWEEFMEKVNKKAVTKDLWNQMFE-FATTVKTDFSDYDEEASWPTALDDFVN...... 110
7 -6.560PF01427.17; DDPX_ECOLI/3-187; D-ala-D-ala dipeptidase  ali follow..  40LHKDAITALAKSISIAQLSGLQLVI--YRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGTAIDLTLRDEHGNILDMGAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGISSEW............... 161
8 -6.490PF08897.11; D5WYH9_THIK1/5-137; Domain of unknown function (DUF1841 topsan)  ali follow..  2.KDEVRQFFLSAWQRHRAG-ELIAADWMELHPEYHAELTDPQSANRDYAVEQGRTNPFLLSMHLTIAEQVDQPPGIRQAFELLRSKRGEHEAHHAIMECLGEMLWTAQRS--GLPPDGAAYVDCVQ.......... 132
9 -6.200PF16727.5; A0A194XQL3_9HELO/1150-1239; DNA repair protein REV1 C-terminal domain  ali follow..  1................................ELRDTLSAWHSEFVDDGPHPDDVA----AMERYLRRVILDERDMSKVVNVV------------------RWLAWLIDESDQDNEGTRIWSEALEGIKFKVQAAV 82
10 -6.070PF03305.13; Y364_MYCPN/147-325; Mycoplasma MG185/MG260 protein  ali follow..  3......EAIKKTWGDYQKVGYTFKASVFENWHELLDFSARIARSFTNIHTKETKKGTDIQGVLG--------IDSTPNALFTSVFAAGGGNYDNFFYKVQDGRA---FSNFKNKETSYQNLQKVFSDYKELIDKN. 126

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.