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Query: d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATTPPATLPSSLast
1 -72.900d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors  100  1EELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATTPPATLPSS 172
2 -62.100d1naza_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}  ali model 3D-neighbors follow..  30  2.VLSEGEWQLVLHVWAKVEADVAGHGQDIYIRLFKSHPETLEKFDRFKHLKTEAEMKASEDLKKQGVRVLTALGAILKKKGH---HEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGNFGADAQGAMNKALELFRKDIAAKYKELGYQG............... 154
3 -58.200d3pt8a_ a.1.1.0 (A:) automated matches {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  14  2.TLTNPQKAAIRSSWSKFMDNGVSNGQGFYMDLFKAHPETLTPFKSLFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHLDDNDMLVVLIQKMAKLHN-NRGIRASDLRTAYDILIHYMED--HNHMVGGAKDAWEVFVGFICKTLGDYMKELS.................. 151
4 -57.900d1q1fa_ a.1.1.2 (A:) Neuroglobin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  20  1....RPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNRQFSSPEDSLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLTSLGRKHR-AVGVRLSSFSTVGESLLYMLEKSLGPDFTPATRTAWSRLYGAVVQAMSRGWDG.................... 148
5 -57.700d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]}  ali model 3D-neighbors follow..  27  11.DLTLAQKKIVRKTWHQLMRNKTSFVTDVFIRIFAYDPSAQNKFPQMAGMSA-SQLRSSRQMQAHAIRVSSIMSEYVEELDS-DILPELLATLARTHD-LNKVGADHYNLFAKVLMEALQAELGSDFNEKTRDAWAKAFSVVQAVLLVKHG..................... 157
6 -56.700d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}  ali model 3D-neighbors follow..  31  1.SLSAAEADLAGKSWAPVFANKNANGLDFLVALFEKFPDSANFFADFKGKSV-ADIKASPKLRDVSSRIFTRLNEFVNNAANAGKMSAMLSQFAKEHV-GFGVGSAQFENVRSMFPGFVASVAA--PPAGADAAWTKLFGLIIDALKAAGA..................... 146
7 -56.500d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}  ali model 3D-neighbors follow..  24  2.EWTDKERSIISDIFSHMDYD--DIGPKALSRCLVVYPWTQRYFSGFGNLYNAEGIMSNANVAAHGIKVLHGLDRGMKNMDN---IADAYTDLSTLHSEKLHVDPDNFKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAAVVSALGKQYH..................... 146
8 -56.400d3qqqa_ a.1.1.2 (A:) automated matches {Trema tomentosa [TaxId: 3480]}  ali model 3D-neighbors follow..  24  2..FTEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFSYLKDSP--IPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKRESNLKRLGAIHF-KNGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGEAYDQLVAAIKSEMK..................... 150
9 -55.700d2w72a_ a.1.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  2..LSPADKTNVKAAWGKVGAHAGEYGAEAYERMFLSFPTTKTYFPHF------DLSHGSAQVKGQGKKVADALTNAVAHVDDMPNA---LSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKYR..................... 141
10 -55.000d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  25  1.AFTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFEYK------DYSAAGAKVQVHGGKVIRAVVKAAEHVDD---LHSHLETLALTHGKKLLVDPQNFPMLSECIIVTLATHLTE-FSPDTHCAVDKLLSAICQELSSRYR..................... 140
11 -54.900d2c0ka_ a.1.1.0 (A:) automated matches {Gasterophilus intestinalis [TaxId: 84525]}  ali model 3D-neighbors follow..  20  1..MNSEEVNDIKRTWEVVAAKMTEAGVEMLKRYFKKYPHNLNHFPWFKEIPF-DDLPENARFKTHGTRILRQVDEGVKALSGDKKFDDVWKKLAQTHH-EKKVERRSYNELKDIIIEVVCSCVK--LNEKQVHAYHKFFDRAYDIAFAEMAKM................... 150
12 -54.800d1x3ka_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  17  4.GLSDSEEKLVRDAWAPIHGDLQGTANTVFYNYLKKYPSNQDKFETLKGHPL-DEVKDTANFKLIAGRIFTIFDNCVKNVGNDKGFQKVIADMSGPHV-ARPITHGSYNDLRGVIYDSMH------LDSTHGAAWNKMMDNFFYVFYECLDGRCSQFS.............. 152
13 -54.800d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}  ali model 3D-neighbors follow..  23  9.QLTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLGDVS---QGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAVNHI-TRKISAAEFGKINGPIKKVLA---SKNFGDKYANAWAKLVAVVQAAL.......................... 146
14 -54.200d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  15  1.SLSAAQKDNVKSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHK-ARGISAGQLEAAFKVLAGFMKSYGGD------EGAWTAVAGALMGMIRPDM...................... 142
15 -54.100d3qm9a_ a.1.1.2 (A:) automated matches {Thunnus atlanticus [TaxId: 48168]}  ali model 3D-neighbors follow..  24  1.....ADFDAVLKCWGPVEADYTTIGGLVLTRLFKEHPETQKLFPKFAGIAQ-ADIAGNAAVSAHGATVLKKLGELLKAKGS---HAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAG--LDAGGQTALRNVMGIIIADLEANYKELGFS................ 145
16 -53.900d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}  ali model 3D-neighbors follow..  21  1.GLSAAQRQVVASTWKDIADNGAGVGKECLSKFISAHPEMAAVFGFSG--------ASDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRHKGNKHIKAEYFEPLGASLLSAMEHRIGGKMNAAAKDAWAAAYGDISGALISGLQS.................... 147
17 -53.700d3ozua1 a.1.1.0 (A:1-150) automated matches {Ralstonia eutropha [TaxId: 381666]}  ali model 3D-neighbors follow..  20  2..LTQKTKDIVKATAPVLAEHGYDIIKCFYQRMFEAHPELKNVFNM-----------AHQEQGQQQQALARAVYAYAENIEDPNSLMAVLKNIANKHA-SLGVKPEQYPIVGEHLLAAIKEVLGNAATDDIISAWAQAYGNLADVLMGMESELYERS............... 144
18 -53.600d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  19  3HCCSEEDHRIVQKQWDILWRDTEGFGRLLLTKLAKDIPEVNDLFKRVD-----IEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLD----DYDALAWKSCLKGILTKISSRL...................... 149
19 -53.600d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}  ali model 3D-neighbors follow..  23  10.TLTDGDKKAINKIWPKIYKEYEQYSLNILLRFLKCFPQAQASFPKFST--KKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKTVFKVDSIWFKELSSIFVSTIDGGA----------EFEKLFSIICILLRSAY...................... 146
20 -53.300d2zs0d_ a.1.1.0 (D:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  20  1ECCSRGDAEVVISEWDQVGSSESAIGVAIFDVFFTSSGVSPSMFPGGGDSS-------SAEFLAQVSRVISGADIAINSLTNRATCDSLLSHLNAQHKAISGVTGAAVTHLSEAISSVVAQVLPSAHI----DAWGYCMAYIAAGIGAGL...................... 145
21 -53.200d2bk9a_ a.1.1.0 (A:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  26  1..MNSDEVQLIKKTWEIPVATPTDSGAAILTQFFNRFPSNLEKFP-FRDVPL-EELSGNARFRAHAGRIIRVFDESIQVLGDLEKLDEIWTKIAVSHI-PRTVSKESYNQLKGVILDVLTA--ASSLDESQAATWAKLVDHVYAIIFKAIDDDGNAK............... 153
22 -52.400d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}  ali model 3D-neighbors follow..  21  2.KLSEDQEHYIKGVWKDVDHK--QITAKALERVFVVYPWTTRLFSKLQGLFSAN----DIGVQQHADKVQRALGEAIDDLKK---VEINFQNLSGKHQ-EIGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYH..................... 141
23 -52.300d3wfwa1 a.1.1.0 (A:1-133) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  18  1..MTREEIKMIQKSWLRVIDKMDEAGLLFYRRLFDVEPKVRPLF--------------KIDIEKQGRKLMDVLNWIVLNLQDIDAALDAARELARRHV-KYGVKAEHYPVVGHTLIWTLRKMIGSEWTKQLEQLWTQAYEALAQVMIEEH...................... 133
24 -52.300d2zs0c_ a.1.1.0 (C:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  19  4..CSSEDRANVMHNWDAASDRRVALAQAVFASLFSRDAAAQGLFSGVSA-----DNPDSADFRAHCVRVVNGLDVAINMLNDPAVLNEQLAHLSAQHQARAGVAAAHFDVMAEAFAEVMPQV----SSCFSSDSWNRCFARIANGISAGL...................... 147
25 -52.000d2zs0b_ a.1.1.0 (B:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  21  1.DCTSLNRLLVKRQWAEAGTNRELLGNRIWEDLFANMPDARGLFSRVNG-----NDIDSSEFQAHSLRVLGGLDMCVASLDDVPVLNALLARLNSQHD-SRGIPAAGYPAFVASAISAVRATVGARSFDN--DAWNSCMNQIVSGISG........................ 142
26 -51.800d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  24  2.HWTQEERDEISKTFQGT--DMKTVVTQALDRMFKVYPWTNRYFQKRT----------DFRSSIHAGIVVGALQDAVKHMDD---VKTLFKDLSKKHADDLHVDPGSFHLLTDCIIVELAYLRKDCFTPHIQGIWDKFFEVVIDAISKQYH..................... 136
27 -51.800d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  22  1.ECLVTESLKVKLQWASAAHERVAFGLELWRDIIDDHPEIKAPFSRVRG-----DNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHV-ERNLKPEFFDIFLKHLLHVLGDRLGTHFDFG---AWHDCVDQIIDGIK......................... 140
28 -51.700d3ubca_ a.1.1.0 (A:) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  19  1..IDQKEKELIKESWKRIEPNKNEIGLLFYANLFKEEPTVSVLF--------------QNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHK-QYGVVDSHYPLVGDCLLKSIQEYLGQGFTEEAKAAWTKVYGIAAQVMTA........................ 131
29 -50.900d2wtga_ a.1.1.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  14  3..NRQEISDLCVKSLEGRMAQNIENGNAFYRYFFTNFPDLRVYFKGAEKYT-ADDVKKSERFDKQGQRILLACHLLANVYTNEEVFKGYVRETINRHR-IYKMDPALWMAFFTVFTGYLESVGS--LNDQQKAAWMALGKEFNAESQTHLKNSN.................. 154
30 -50.800d3wctd_ a.1.1.0 (D:) automated matches {Lamellibrachia satsuma [TaxId: 104711]}  ali model 3D-neighbors follow..  20  2..CSEADATIVIKQWNQIAKSRWTMGNEIFSSLFKLKPESEVLFNNVNV-----ANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVARTGLKAVYFDAMGKVLMTVLPS-LIDNFNPD---AWRNCLLPLKNAIAKGL...................... 146
31 -50.600d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]}  ali model 3D-neighbors follow..  13  1.TLTKHEQDILLKELGPHPAHIVETGLGAYHALFTAHPQYISHFSRLEGHTI-ENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKDHT-SRKVTKDEFMSGEPIFTKYFQNLVKDAEGKAAEKFLKHVFPMMAAEI.......................... 147
32 -50.600d1x46a_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  20  6.DMEAGDIALVKSSWAQIHDK----EVDILYNFFKSYPASQAKFSAFAGKD-LESLKDTAPFALHATRIVSVINEAIGVAENRPALKNVLKQQGINHK-GRGVTAAHFEEFETALEAFLES-HASGYNAGTKKAWDSAFNNMYSVVFPEL...................... 150
33 -50.300d2zs0a_ a.1.1.0 (A:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  21  2..CNRLEQILVKTQWAQSAENRAAFSRDLFSELFNIQGSSRALFSGVG-----VDDMNSAAFTAHCLRVTGALNRLISQLDQQATINADLAHLAGQHA-SRNLDASNFAAMGQAVMSVVPTHLD----CFNQHAWGECYERIASGISG........................ 140
34 -50.200d4hswa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]}  ali model 3D-neighbors follow..  12  2..........FKQDIATIRGDLRTYAQDIFLAFLNKYPDERRYFKNYVGKS-DQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQ-HSSLTTGNFEKFFVALVEYMRAS----GQSFDSQSWDRFGKNLVSALSSAGMK.................... 137
35 -49.800d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}  ali model 3D-neighbors follow..  20  1.GLTAAQIKAIQDHWFNIKGCLQAAADSIFFKYLTAYPGDLAFFHKFSSVPL-YGLRSNPAYKAQTLTVINYLDKVVDALGGN--AGALMKAKVPSHD-AMGITPKHFGQLLKLVGGVFQEEFS--ADPTTVAAWGDAAGVLVAAM.......................... 140
36 -49.800d2wy4a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  15  1...TKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM-----------EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHV-NLGVKEEHYPIVGACLLKAIKNLLN--PDEATLKAWEVAYGKIAKFYIDIEKKLYDK................ 139
37 -48.100d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}  ali model 3D-neighbors follow..  12  1...ANKTRELCMKSLEHAKNEARQDGIDLYKHMFENYPPLRKYFKSREEYTA-EDVQNDPFFAKQGQKILLACHVLCATYDDRETFNAYTRELLDRHA-RDHVHMPPE--VWTDFWKLFEEYLKTTLDEPTKQAWHEIGREFAKEINK........................ 147
38 -47.700d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]}  ali model 3D-neighbors follow..  16  1..LSADQISTVQASFDKVKGD----PVGILYAVFKADPSIMAKFTQFAGKD-LESIKGTAPFETHANRIVGFFSKIIGELPN---IEADVNTFVASHK-PRGVTHDQLNNFRAGFVSYMKAHTD---FAGAEAAWGATLDTFFGMIFSKM...................... 136
39 -36.000d1tu9a1 a.1.1.2 (A:2-130) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  14  1.....NAADRVMQSYGRCCAS-TGFFDDFYRHFLASSPQIRAKFA-------------TTDMTAQKHLLRAGIMNLVMYARGMSDSKLRALGASHSRA-ALDIRPELYDLWLDALLMAVAEHDRD-CDAETRDAWRDVMGRGIAVIKSYY...................... 129
40 -34.200d2xkia_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]}  ali model 3D-neighbors follow..  12  2............VNWAAV-------VDDFYQELFKAHPEYQNKFGFKG--VALGSLKGNAAYKTQAGKTVDYINAAIGGSAD-------AAGLASRHK-GRNVGSAEFHNAKACLAKAC----SAHGAPDLGHAIDDILSHL.............................. 110
41 -10.400d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  11  33.RLGDAELYVLEQLQPLIQENIVNIVDAFYKNL-DHESSLMDIINDHSSVD-----RLKQTLKRHIQEMFAG-----------DEFIEKRNRIASIHL-RIGLLPKWYMGAFQELLLSMIDIYEASITNKAIKATTKILNLEQQLVLE........................ 169

FFAS is supported by the NIH grant R01-GM087218-01
1 3 2 7 8 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Li Z, Li W, Godzik A. FFAS03: a server for profile--profile sequence alignments. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W284-8.