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Query: [J] COG0018 Arginyl-tRNA synthetase, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNVMQENQIKLIEHIKQAVVQAVGLEETEVPEILLEVPKDKKHGDYSTNIAMQLARVAKKAPRQIAESIVPELKKDTKLIKEVEIAGPGFINFYLDNAYLTDLVPVILTEDKKYGESDFGKGEKFQIEFVSANPTGDLHLGHARGAAIGDSLANIMKMAGFDVSREYYINDAGNQINNLVLSAEARYFEALGLESEFPEDGYRGSDIIALGKDLAAKYGDKYVNASEEERRSVFRVDALAFETGKLRADLEEFRVSFDEWFSETSLYEENKVLPALERLRENGYIYEQDGATWLRTTDFEDDKDRVLIKSDGSYTYFLPDIAYHLNKLERGFDVLIDIWGADHHGYIPRMRAAIEALGYSPNQLEVEIIQLVHLFEDGVQVKMSKRTGKSVTMRDLIEEVGLDATRYFFAMRSSDTHMNFDMSLAKSTSNDNPVYYVQYAHARISSILRSGKEQGLEVSKDANMSLLETEAEYDLLKVLGEFADVVAEAAVKRAPHRIVRYLNDLATAFHRFYNSNKVLDMDNLEVTKARLALIKTAQITLRNGLTLLGVSAPEKMLast
1 -3.530PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  10  3........................................................................................................................................................................................................................................................................................................................DSLFWAIDIKNQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLEC------SEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSHPGIRTL-------LHKAGYKDDADCEGMLLELRSRIGGNNS---PHEIGLFIGYPAKDVAAFMGLVKIYGNPARSLALAEQCCRNKMGAILARGTSKTLE...... 237
2 -1.890PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  1................................................................IKEELVRCIWFGQHI-LRLEILSPGWWNNEEGPDFKHAEF-FLEGKGLIRG--------SVEIHVFASD----HH-KHENQKTYDAVCLHVVNFSGKVIPQITLSLYLEAELDEIIETIDVGSYIGNKQVIPGYCNLRKQKITQQWIGGFLDYAGDERILQKAKKYEKWIENKPFERVL--YEAIMESLGYKNNKFLMLASLVTAETIQSFVPEYTPAQEKKIIAQSLLLGMAGLLPLNEEETKRFDDETIQYFDRIFSTWQGIKPKIHQTPLTRESWSYTGIRRIVAIANIL---SEHLDNGLFRYILRIFQKRDDTKKNTRGFKSFVNEFLSPFLETHDAYW------SYRYTPGGKKLNKPQK-NVIIPVMLVYARKHN-LEERLHYIYRNYTPHPSTSVTKFMGTRIFGTSMVSNKVIHSARRQQG-------LYQLFKDF............................................... 459
3 -1.880PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  10  27.......................................................................................................................................................................................................................................................................................................................................................................................EKGC-VSITIGLGDI-----HIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFME--IYRFLTVDGNNVDSNQDRLALLKTLKVK-------YKDVTASVLEDHLK.......... 193
4 -1.880PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  43.............................................................................................................................................................................................................................................................................................................................................................................................LLTGEQHSLLAYQIFRDEVMFGGFCQLIQNGYGGYIFDNPFAKVMRLWGAEDFSKL----YKAKKIYDAHRHDLEKERTEDEFMAMYEQYE-----AFDDLEEEYLDIEEEVT-ALVASYVDDHLELFAKI............................................ 164
5 -1.870PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  87......................................................................................................................................................................................................................................................................................................NISYTILDEGSETTYAKVWQAIMFEDTQNGDYDYN---DLIIHV-------------KNTASNHAYQHPTETWQTIEIQPIALGSTKTIKSDGSTHMISDDVRTDLFGGRQGFINTVNDNDPIRYKLASTNIKNYAMPKKWFIEVDGKRMYAASSDIDYKSYDMVNKENM-----PYGLAVSNGNGTFSYPQEKNSLFETYPGFSDWINGKVSSIGSFQKE------LVYKYCSGGIIGEDGKSHKIWDYLDL......... 326
6 -1.790HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  13  8........................................................................................................................................................................................................................................................................................................................................................................................................FDELLERIASEKRVYRKVKEIFALSVDYDSKSQVAQS-QNKLEYAATGHTAPELIAKRADASKRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLR--FNGREVLENFGT................................ 158
7 -1.710PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  62.......................................................................................................................................................................................................................................................SNASSAATKVNSAWKHYKLTVTGDDFSWTYQPESNEPIVDGEAAAIISHNEAFVWPVRLVESLSGKTKTTATSNEVDLDQDVDLSMLSDTFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDE-----QAGKFTVEKARSNEKLNREHVIKYAELELA---------------SLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGKV-SSVLQWISFADPANPTLDTSQISSWAAELANGFNTVGSTRWWTRADGKQCAVE--SLAKQVEDAINNK............ 350
8 -1.640HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali follow..  19  76...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................NDTDMKYILRRMEKYGISSEKKIESAIRIVGNENPYHPIRDYLNGL................................................... 121
9 -1.520PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  10  1.........................................................................................YIQTSFYQEKINEIISPLSRSAFAYGTFFDQDVLVNKIKVTPRSRGERVFEGYI---IIEDLWA--IHSLNLKTSLLGFQIQATQQYAPVAENVWMPLTHTYRXXXXXXXXXXXXXYLASTRDYEVTMNPDLAYVPEEKVQEVPDEVAEFDKSESALEQLAKEQPTTRKEYRKMINEYEKEAMKEREEPEVIRESYYSIDSLAKKRELSYWDSIRPVPLTEKEIEGYNRDDSLAVVEAAKVSEVDSLDFMNGATYNFGAGFKQNWTKISFNTVE---------FKLGMGLFYRKYQEEKLADSVNRIRKSFNIEPLRYGF----SSNKFYGKVDFRWSTTKPISGHTFGIEGGK--YIYQFNGGDPINEQVNAFYSLLFRQNYMKLYEQ.............................................................................. 396
10 -1.480PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  11  122....................................................................................................................................................................................................................................................DGVIAMMERNDGPTLVVTDSQAIDVVHPWTLDRSSGRPLVPITTFSIAMAY------------QQNGGRLDPFVEGLEALET---QDGDRVLISEACNHN----RITSACNDIG------MVQIPNKLEAALGGKKLQIEHAFG-----REFPELESGGMDGLKLAIHCGGCMID-KMQQRMKDLHEAGVPVTNYSWAAWPDALRRA......................................................................................................... 304

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.