current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: [E] COG0019 Diaminopimelate decarboxylase, from VFDB

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .
# Score Template Links and tools%idFirst MTFERLGTMNVNAEGHLEIGGVDTLKLTEKYGTPLYVYDVALIRDRARGFKKTFEELGVKAQVAYASKAFSAVAIYQLMAEEGLSLDVVSGGELYTAIKANFPPERIHFHGNNKSAEEIHMALDYGIGCFVIDNYYEISLLEDILIERNEKAAVLIRVTPGIEAHTHDYILTGQDDSKFGFGLTNGQAEKAIKQVLHASASFDLIGLHCHIGSQIFETTGFKLAARRIMDKLVEWHGTLGFDSKVLNLGGGFGVRYTAEDEPLEPSEYVRQIMDEVRDVANSNDIAIPEIWIEPGRSLVGEAGTTLYKVGSRKEVPGIRNYIAVDGGMSDNIRPALYDAHYDAVLAANPEKVAEETVAIAGKCCESGDMLIWDLPLPKSDAGEILAVFCTGAYGYAMASNYNRIPRPPVVFVENGMDKLIVARETYENLVQNDLSLLast
1 -4.230PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  13  42..............................................................VAFSQVAYPNTII------AGVDVSFSNASSAATKVNSAWKHYKLTVTGDDFS-----WTYQPESNEPIVDGEAAAKEIISHNEAFVWPVRLVESLSGKTKTTTSNEVDLDQDVDLSMLSDT-------------------------------FDQKKFEKDLGAAIDEFNERSGTFEANSSYDEQAGKFTVEKARSNEKLNREHVIKYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTLKLNGEDAGKVDGSSVLQWISFADPANPTLDTSQISSWAAELANGFNTVGSTRWW-TRADGKQCAV-EGGDFGWSIDSSSLAKQVEDAI.......................... 347
2 -2.400HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  10  42..........................................................................................................................................................................................................................................................GYGLSYT------TFTQEIQGQPEISVNIDSETGAPQAYATFN----------VKVTNTGKVPGKTSVQIYGQAPYTEGGLEKVAIQLLNFEKSSELAPGASEIVSVKV-----DLQYIASYDMEHDNGDGTTGTYVLDPGTYYFAAGNGAHDALNNILVLQGADES................... 187
3 -1.470HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  16  1......................................................................................................................................................................................................................................................................................................................................................................LVGVFCVEGDVFIVHIREICFPVLFFCHFSVSDTFANKAASG.................................... 45
4 -1.370PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  23.................................................................................................................DAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPA-SRPRVTLPEAQELAEARRRGAASLGLSVAILVSTGIPLFAFRGLSETGLVPFNEDTATFLALAVDLPLVALGVIMLLTRSRLFTNVKHLVDLEFTP--DPIVTAWAARLRLEHEDRRMRRLAIAVGLWICAAL............................................................................................................................ 228
5 -1.320HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  119..........................................................................................................................................................................................................................................................................................................IAKYNTFLENITDCPMEESKKEQWSAEVKC---LRAYFF-PLKTLSVDEANSISQTPQTEVYSQVEK--DLKTAIDLLPVHYLRGI---LPGGG............................................ 217
6 -1.310PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  13  74.............GGRLLRPQAQVMEEAIRHWATVLSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPTL-----------VVTDSQAIDVVHPWTLDRSSGRPLVPITTFSIAMAYQQNGGRLDVEGLEALETLQD--------DRVLI-----SEACNHNRITSACNDAALGGKKLQIEHAFGREFPELESGGMDGLKLAIHCGGCMIDAQKMQQRMKDLHEAGVPVTN-YGVFFSWAAWPDAL........................................................................................................................................................................................ 301
7 -1.140PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  11........................TTMALQKAILVYGVAKRNLYDPDQSLAITHATINDGAPVLKAGRLMTQSDLNELVTGLSIDTTMLALGAGRMIWYTPACQRAMFFKTSSFTKDTFEAQGQLPTPGLVWLVMQGALYVYAYKGSGRPDKETKLYQAPFFNVWSQGKVCTGNAAMPVGDNAAIPHMWVDAFRLVKGVCPIDFWKAMTEKPLPVFPEGRLVDLPLTVADLLAPDLNQ---KLGNIDRAAG......................................................................................................................................................................................... 263
8 -1.140HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  11  19........................................................................................................RELLLIGKRKDEDDMAKSTKTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKAE-KKRTHRLCQIGG...................................................................................................................................................................................................................................................................... 89
9 -1.110HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  12  35.......................................SLKTLGEARIFLSKFETAHSYYVHCYGEQSRNSKKHQANVKTARLYISHFIQVLNLAVIRMEIKESHKALYGLPVDNFSVP----------DLSSEASLAEWGQKIIEGERK-----RTSQGGIPIYNPTIAKVKVHYD---IFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILD----------IWNQVEAKFQDVSPNEKRLEKCRDYGLIIIIGPEKNRIRRFFKICLSIHIPIFFWKSLQ--KITFRYGTCPCCRCDAYLYA................................................................................................................................ 273
10 -1.100PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  28..............................FITLGADPAGEHGESMLKVGRELLNEGGNEILAEFICQGAIDPKVIEEMKEMAAKMGDKAIHLITPERQATWKQAS-----THPDENDLKNARK........................................................................................................................................................................................................................................................................................................................ 116

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 7 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Topczewski J, Godzik A., Paszewski A. The Aspergillus nidulans cysA gene encodes a novel type of serine O-acetyltransferase which is homologous to homoserine O-acetyltransferases. Microbiology. 2000 Oct;146 ( Pt 10):2695-703.