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Query: [S] KOG4137 Uncharacterized conserved protein, from VFDB

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGSRGNSSNSSVSNNSNNNNNNDGGDERLLFLRSVGERNEIGFPSRFKSAHYKKPTRRHKSARQLISDENKRINALLTKANKAAESSTAARRLVPKATYFSVEAPPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKPMAPGVDQEYLKLRGANFVLKLast
1 -85.300[S] KOG4137 Uncharacterized conserved protein  ali  100  1MSGSRGNSSNSSVSNNSNNNNNNDGGDERLLFLRSVGERNEIGFPSRFKSAHYKKPTRRHKSARQLISDENKRINALLTKANKAAESSTAARRLVPKATYFSVEAPPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKPMAPGVDQEYLKLRGANFVLK 166
2 -60.300[S] COG5195 Uncharacterized conserved protein  ali follow..  43  2..............................EKNSSVDSLDISLLARPFRNPNYKAQPRRNRNLRQIIQNDPVQNEP-------------------SKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPKTRLRYHNKEIYGLIRE-LPSGADQEYLKLRSSDVVLK 117
3 -28.300[R] KOG3362 Predicted BBOX Zn-finger protein  ali follow..  15  81.ANQLRASSRISNLEGNRTLDENARRNRRNRQLDGLEQDNSHDDPHANLVWNKNAPKFDDEMIGGPSAKKAKKVKEDKSGIVHGEKARRRKLARRRVNAYQLSSAPPSEKPARKFCAVCGIISKYCCTRCGAKYCSLPCRDVHNDT.................... 256
4 -24.200[R] KOG2897 DNA-binding protein YL1 and related proteins  ali follow..  11  114.VTKRRPRPRFTVLDSGRKSIRTSTAIKTQATKIRLKELDDARKRKKKKVRVEDYMPTQEELLEEAKITEEENTKSLEKFQKMELEKKKSRPTKRPTIRYHSLTMKAPPKASNGICPITRLPARYFDPITQQPYYSIQAFKILREAYYMQLEQQ............ 315
5 -16.200[K] KOG2857 Predicted MYND Zn-finger protein/hormone receptor interactor  ali follow..  16  4..............................................................................................................RATQTCEICE-VSKYKCPSCLVPYCSLGCFKIHKVC.................... 40
6 -12.400[R] KOG2858 Uncharacterized conserved protein  ali follow..  21  2................................................................................................................AVLCGVCG-EFKYKCPRCLVQTCSLECSKKHKT..................... 35
7 -11.800[S] KOG4317 Predicted Zn-finger protein  ali follow..  17  13.....................................................................................................SNSSPLNPSSTRIICHVCN-FSQYTCPRCNFRYCSLPCYKSHSVQCTESFMRDNVN......... 69
8 -7.950[S] COG4068 Uncharacterized protein containing a Zn-ribbon  ali follow..  16  8..............................................................................................................EPHKHCPVCSTPIP------DEVTCSERCQEILSKNQQRVVVWVVLSIRG...... 67
9 -7.040[S] KOG4850 Uncharacterized conserved protein  ali follow..  10  117....PKCTQIINGSVDVDTEDRQKRKPESDGRTAKALRSLQFTNPGRQTEFAPETGKREKRRLTKNATAGSDRQVIPAKSKVYD-------------------SQGLLIFSGMDLCDCLDEDCLYACPACGSTKCGAEC------RCDRKWLYEQIEIEGGEIIHN 256
10 -7.030[L] KOG3014 Protein involved in establishing cohesion between sister chromatids during DNA replication  ali follow..  1MQAKINSFFKPSSSSSIAASVTTDTDDGLAVWENNRNAIVNTYQRRSAITERSEVLKGCIEKTLKKGSSSVPKNHKKKRNYTQFHLELGQSDF-------------------LRHCAECGA--KYADEKNHQSFHK.............................. 121

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 3 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.