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Query: gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLMLast
1 -6.110sp|Q5T6L9|CF070_HUMAN Transmembrane protein C6orf70 OS=Homo sapiens GN=C6orf70 PE=2 SV=1 (Range: 1-129)  ali follow..  11  1.....................................................................................................MEVLIGDPITTCLSPSVYDIICNLGFQLRENINSIVTQNGEVKTITDCVSYTESEQGLDYWGSVRLLVHSHFLSLTKGQFEIRYAPWFQWTSFPELFPEIFDALES-LQSPAISLSLM 127
2 -5.610sp|Q5DID0|UROL1_HUMAN Uromodulin-like 1 OS=Homo sapiens GN=UMODL1 PE=2 SV=2 (Range: 160-262)  ali follow..  18................................................................................................................................VKMDFKELQQVDPRLLNHMRLLHSLVTSALQPMASTVHHLHSAPGN--------TTVSRLLLGLPRPLPVADVSTLLGDIAKRVYEVISV. 101
3 -5.530sp|Q8WTW3|COG1_HUMAN Conserved oligomeric Golgi complex subunit 1 OS=Homo sapiens GN=COG1 PE=1 SV=1 (Range: 172-441)  ali follow..  5.................................................................................................................LIRQVAAASHFRSTILHESKMLLKCQGVSDQAVAEALCSIMLLEESSPRQALTDFLLARKATI------------QKLLNQPHHGAGIKAQICSLVELLATTLKQA 98
4 -5.360sp|Q9UNS1|TIM_HUMAN Protein timeless homolog OS=Homo sapiens GN=TIMELESS PE=1 SV=2 (Range: 334-521)  ali follow..  91...........................................................................................................................TDRKEAASWARRMHLALKAYQELLATVNEMDISPDEAVRESSRIIKNNIFYVMEYRE-------FLALFRKFDERCQPRSFLRDLVETTHLFLKML 180
5 -5.260sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2 (Range: 1-300)  ali follow..  11  1.....................................................................................................MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPLRCLFSHVDFSGDGKSSGKDFHQTQFLIQECALL--YAIDNPLHYQKSLKPAPHLFAQLSKVLKSKVQEVIFGLALL 134
6 -4.960tr|C9IYA4|C9IYA4_HUMAN Uncharacterized protein OS=Homo sapiens GN=C14orf80 PE=4 SV=1 (Range: 29-252)  ali follow..  13  89.............................................................................................................................EAEGPVDVRHVQWLMGKLRFRWRQLVSSQQ----EQCALLSKIHLYTRGCHSDQSLSHLSVTEAEMLRDPEGGQQLLRTLERENQRLEAVLA.. 176
7 -4.940sp|Q8N0W3|FUK_HUMAN L-fucose kinase OS=Homo sapiens GN=FUK PE=2 SV=2 (Range: 498-704)  ali follow..  12  32............................................SWEQLQPCLDRAATLASRRDLFFRQALHKARHVLEARQDLSLRPLIWAAVREGCPGPLLATLDQVAAGAAARALACVADVLG---------MAEGRGGLRS----MRPFSYLECGDLAAGVEALAQER----------------DKWLSRPALLVRAARHYEGAGQILIR..... 186
8 -4.930sp|O60313|OPA1_HUMAN Dynamin-like 120 kDa protein, mitochondrial OS=Homo sapiens GN=OPA1 PE=1 SV=3 (Range: 825-960)  ali follow..  12  61.....................................................................................................................................RMLAITANTLR------QQLTNTEVRRLEKNVKEVLE---------DFAEDGEKKIKLLTGKRQLAEDLKKVREIQEKLDAFIEAL 132
9 -4.710sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2 (Range: 491-632)  ali follow..  15  29...........................................................................................................................................QGSTAELITGLVQVPQSHMPEIAQEAMEALLVLHQLDSIDLWNPDAPVETFWEISSQMLFYICKKLSHQMLSSTEILKWL 110
10 -4.640sp|Q71F23|CENPU_HUMAN Centromere protein U OS=Homo sapiens GN=MLF1IP PE=1 SV=1 (Range: 321-418)  ali follow..  18  17................................................................................................................................LQTKYDELKERKSSLRNAAYFLSNLKQLYQDYSDVQAQEPNVKETYDS---------SSLPALLFKARTLLGAESHLRNINHQLEKLLD.. 96

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 8 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.