current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MQTTFTELMQQLFLKLGLNHQVNENDVYTFTFEVDGHIQVLIACYHQQWVQLFSELGADLPTNDNLFGEHWPAHVQGRLDGKPILWSQQSLVGLDIDEMQAWLERFIDDIEQRKEPQNTKFQPNSTSPILFILast
1 -6.510sp|Q969R8|ITFG2_HUMAN Integrin-alpha FG-GAP repeat-containing protein 2 OS=Homo sapiens GN=ITFG2 PE=2 SV=1 (Range: 335-447)  ali follow..  15  29...................................................................GRNSPCLVYVTFNQKIYVYWEVQLERMESTNLVKLLETKPEYHSLLQELGVDPDDLPVTRALL.. 91
2 -6.290sp|Q5XUX0|FBX31_HUMAN F-box only protein 31 OS=Homo sapiens GN=FBXO31 PE=1 SV=2 (Range: 121-219)  ali follow..  10  11CRDVYAKLLHRYRHILGLWQPDIGPYGGLLNVVVDGLFIIGWMYLPPHDPHVDDPMRFKPLFRIHLMERKAATVEC........................................................ 86
3 -4.880sp|Q96RY5|CRML_HUMAN Protein cramped-like OS=Homo sapiens GN=CRAMP1L PE=1 SV=3 (Range: 1172-1241)  ali follow..  12  16...SGTSLLGPSLLDGNSRDSFVSRSLADVAEVVDSQLVCMMNENSIDYISRFNDLAQ.......................................................................... 70
4 -4.730sp|Q8IWR1|TRI59_HUMAN Tripartite motif-containing protein 59 OS=Homo sapiens GN=TRIM59 PE=2 SV=1 (Range: 153-328)  ali follow..  11  5.WTDLTHLIEKLKEQKSHSEKMIQGDKEAVLQYFKELNDT----LEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELMALTISLQEESPLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRV.. 129
5 -4.620sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3 (Range: 1592-1714)  ali follow..  11  22.....SQILTRLCKDGKVDGPHFGPPGRVKV-PTDEHVALLALRHWEDIPRAGCRLVPEHVETRPLLNPDKPGI----EQGRLELWVDM........................................... 119
6 -4.600sp|Q9UFW8|CGBP1_HUMAN CGG triplet repeat-binding protein 1 OS=Homo sapiens GN=CGGBP1 PE=1 SV=2 (Range: 104-167)  ali follow..  18  6.................................................................................KMCLEANIPLEKADHPAVRAFLSRHVKNGGSIPKSDQ.............. 42
7 -4.320sp|Q96QZ0|PANX3_HUMAN Pannexin-3 OS=Homo sapiens GN=PANX3 PE=2 SV=1 (Range: 291-392)  ali follow..  11  2.......................................TRLCRWDKRLLSVYEMLPAFDLLSRKMLGCPINDLNV------ILLFLRANISELISFSWLSVLCVLKDTTTQ.................... 68
8 -4.270sp|Q9H611|PIF1_HUMAN ATP-dependent DNA helicase PIF1 OS=Homo sapiens GN=PIF1 PE=1 SV=2 (Range: 1-122)  ali follow..  1...........MLSGIEAAAGEYEDSELRCRVAVERTAELSLGRNERRELMLRLQAPGPA-LFTRFAEAGRSTLRLPAHDTPGAGAVQLLLSDCPPDRLRRFLRTL.......................... 120
9 -4.240sp|Q9ULM3|YETS2_HUMAN YEATS domain-containing protein 2 OS=Homo sapiens GN=YEATS2 PE=1 SV=2 (Range: 1141-1232)  ali follow..  13  8..ETIQQLLTAVVKKIPLITAKSEDASCFSAKSVEQYYGWNIGKRRAAEWQRAMTM--RKVLQEILEKNPRFHHLTPLKTKHIAHWCR............................................ 91
10 -4.130sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 (Range: 30-137)  ali follow..  35..DVLQHILIRAFDGISYLGRDRLGQEVYLSLLSDWDLSTAFATASKPYLQLRVDI............................................................................ 95

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 8 8 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.