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Query: gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPELast
1 -78.6005bq5_A mol:protein length:189 Insertion sequence IS5376 putative ATP-binding protein  ali model follow..  47  2................................................................PNKLPYRKTIDTFDFTAQPSVDERRIRELLTLSFIDRKENILFLGPPGIGKTHLAISIGMEAIARGYKTYFITAHDLVNQLRRADQEGKLEKKLRVFVKP-TVLIIDEMGYLKLDPNSAHYLFQVIARRYEHAPIILTSNKSFGEWGEIV-GDSVLATAMLDRLLHHSIIFNLKGESYRLREKRLQEEKQ..... 189
2 -48.9002w58_A mol:protein length:202 PRIMOSOME COMPONENT (HELICASE LOADER)  ali model follow..  16  1.....................................................DERKRQESLIQSMFMPLRASLSDVDLNDDGRIKAIRFAEVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKVP-VLMLDDLGAEAMSSVRDDVFGPILQYRMFENPTFFTSNFDMQQLAHHLTYEKVKAARIMERIRYLAYPIEITGPNRR................ 202
3 -44.0005he8_A mol:protein length:174 Helicase loader  ali model follow..  16  16............................................................................................CTAITNGEQVKGLYLYGPFGTGKSFILGAIANQLKSKKVRSTIIYLPEFIRTLKGGFKDGSFEKKLHRVREAN-ILMLDDIGAEEVTPVRDEVIGPLLHYRMVHEPTFFSSNFDYSELEHHLAMEKTKAARIIERVKSLSTPYFLSGENFRNN.............. 174
4 -39.9003ecc_A mol:protein length:185 DNA replication protein DnaC  ali model follow..  22  7.......................................................................ANLDTYHPKNVSQNRALLTIRVFVHNF-EEGKGLTFVGSPGVGKTHLAVATLKAIYKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSP-VLVLDDLGSERLSDWQRELISYIITYRYNNLSTIITTNYSLQREEESSVRASRLGENVVSKIYEMNELLVIKGSDLR................ 185
5 -33.4004m4w_J mol:protein length:317 Primosomal protein DnaI  ali model follow..  15  101..............................................CPVKRKLDQQKKQQSLMKSMYIQQDLLGATFQQVDISDPSRLAMFQHVT-DFLKKGKGLYLYGKFGVGKTFMLAAIANELAEKEYSSMIVYVPEFVRELKNSLQDQTLEEKLNMVKTT-PVLMLDDIGAESMTSVRDEVIGTVLQHRMSQQPTFFSSNFSPDELKHHFT-EEVKAARLMERILYLAAPIRLDGENRRH............... 310
6 -33.1002qgz_A mol:protein length:308 Putative primosome component  ali model follow..  18  94...............................................KELVEAQKQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAIL-DFVEQQKGLYLYGDMGIGKSYLLAAMAHELSKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVP-VLILDDIGAEQATSVRDEVLQVILQYRMLEEPTFFTSNYSFADLERKWATETWQAKRVMERVRYLAREFHLEGANRRLE.............. 302
7 -22.2004bwy_A mol:protein length:321 P4  ali model follow..  15...............IDLGPRVQSLMEQLATTKLEEGVKNLDMGSVYEITTVMVLGNSILGFHKGDLVKMVRPSVSARDLIGVGYATASAAVVRQIEHKIEAGAELIISGTAGGKTVLTNHYAAQMCAKGLKVAVVSMAEAERPLYGSVLHVFAALHLAAVSDV-DVLYVDSLRSVYNELGGSRQVDGMLTALDQNMRVVFTLNPSDDE-------------NVDAAVRSVFKTASASMHTARRIKSFA.......... 248
8 -18.0002kjq_A mol:protein length:149 DnaA-related protein  ali model follow..  18  2.................................................................GSHMDYPSFDKF-----GTENAELVYVLRH----KHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM---------------PLTDAAFEAEYLAVDQVEK--LGNEEQALLFSIFNRFRNSGKGFLLLG------SEYTPQQLVIREDLRTRM............................... 133
9 -16.6005x06_E mol:protein length:253 DnaA regulatory inactivator Hda  ali model follow..  19  11...................................................RGSHMNTPAQLSLPLYLPDDETFASF-----PGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPE----------VLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILEKTRLLITGDRPPRQ--------NLGLPDLASRL............................... 168
10 -16.2001l8q_A mol:protein length:324 Chromosomal replication initiator protein dnaA  ali model follow..  20  1................................................................KDFLNPKYTLENFIVGEGNRLAYEVVKEALE----SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLEKQIILASDRHPQK-----------LDGVSDRLVSR............................ 155
11 -15.8003bos_A mol:protein length:242 Putative DNA replication factor  ali model follow..  16  3.................................................RSNRVTQHPPLQLSLPVHLPDDETFTSY---YPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS----------ISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAERGSLIVSASASPME--------GFVLPDLVSRM............................... 163
12 -15.5002z4r_A mol:protein length:440 Chromosomal replication initiator protein dnaA  ali model follow..  14  48....................LEKKYYSVLSKAVKVVLGNDATFEITYEAFEPHSSYSEPKRAVLLTPLNPDYTFENFVVGPGNSFAYHAALEVAK----GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDGKQIVICSDREPQK-----------LSEFQDRLVSRGLVAKLEPPDEETRKSIARKMLEIEH.. 280
13 -13.5002w0m_A mol:protein length:235 SSO2452  ali model follow..  14  20..................................................................................................IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQNKVIEAKQKLGYGKARLVIDSVSALFLDKPARKISYYLKRVLNKWNTIYATSQYAITTSQAFGFGVEHVADGIIGELHRYILIEKMRQTDH................. 212
14 -13.4004yds_A mol:protein length:228 Flagella-related protein H  ali model follow..  15  17..................................................................................................IPYPASIMIEGDHGTGKSVLSAQFVLGFLLSDKKGYVITTEQTTKDYLINWNSSLAEKILDVIVNFIDFIVIDSLSAAFSKEKQLLQFMKDIRVLVNTGKMILFTIHPDTFDEEMKSKITSIVDVYLGRRVKILERVKTTGGIS................. 203
15 -13.0005gq1_A mol:protein length:214 Genome polyprotein  ali model follow..  12  10........................................................................................................LIIRGSPGTGKSLATGIIARAIADKYHSSVYSLPPD---------------PDHFDGYKQQVVTVMDDLCQNP-DGKDMSLFCQMVSVSFTSKFVIASTNATNII-------PTVSDSDAIRRRFYMDCDIEVTDSYKTDLGRLDAGRAAKLCSE 157
16 -12.9004wia_A mol:protein length:233 Putative flagella-related protein H  ali model follow..  11  24..................................................................................................IPHGSLIIIEGEESTGKSVLCQRLAYGFLQNRYSVTYVSTQLTTLEFIKIADNKKKDGFLKKVMETKDVIIFDSISALIASEVNVDDLMAFFKRITALKKIIICTVNPKELPESVLTIIRTSATMLIGDLKNLAKILKYNMAPGSYQK............. 213
17 -12.7005z3q_B mol:protein length:214 PV-2C  ali model follow..  15  10........................................................................................................LLVHGSPGTGKSVATNLIARAIAEAENTSTYSLPPD---------------PSHFDGYKQQGVVIMDDLNQNP-DGADMKLFCQMVSILFTSNYVLASTNSSRISPPTV-----AHSDALARRF............................... 127
18 -12.4003nbx_X mol:protein length:500 ATPase ravA  ali model follow..  16  25....................................................................................YERSHAIRLCLLAAL-SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVQALKDEGRYERLTSGYLPEAEIVFLDEI---KAGPAILNTLLTAINERQFRNGLVAASN---------LPEADSSLEALYDRMLIRLWLDKVQDKA.................. 186
19 -12.3004xgu_A mol:protein length:424 Putative pachytene checkpoint protein 2  ali model follow..  20  169..................................................................................................INVNRLILLTGPPGTGKTSLCKGLAQHL-YSKSVMLEINSHSLFSKW-FSESGKLVQKMFDQIDELAVFVLIDEVESLGMCRESSNALLTQIDRIRRRDNVLITSNLE-----------STLDKALVDRA............................... 313
20 -12.2005vq9_D mol:protein length:432 Pachytene checkpoint protein 2 homolog  ali model follow..  19  169..................................................................................................ITWNRVVLLHGPPGTGKTSLCKALAQKTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQALVFVLIDQVESLTAARNACNAVLTQIDQIKRHSNVVITSNIT-----------EKIDVAFVDRA............................... 313
21 -12.1002r2a_A mol:protein length:199 Uncharacterized protein  ali model follow..  11  8........................................................................................................CLITGTPGSGKTLKMVSMMANDEMFKPDENETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQ------------GPKLLDQNLRTLVRKHYHIA....................... 151
22 -11.9003b85_A mol:protein length:208 Phosphate starvation-inducible protein  ali model follow..  16  3..................................................................................AVIRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQALQSKVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQ---MKMFLTRLGFGSKMV-VTGDITQV............... 161
23 -11.8004ypn_A mol:protein length:293 Lon protease  ali model follow..  14  53MPEAVKTKALKELDRLE----------RMQQGSPEATVARTYLDWLTEVPWSKADPEVLD-------INHTRQVLDEDHYGLKDVKERILEYLAVRQLTQGLDVLVLVGPPGVGKTSLGRSIARSMNRKFHRISLGGVRDEAERTYIGAMPGKLIHAMKQVGVINPVILLDEIDKMSSDWRGASAMLEVLDPEQNNTFTDHYLDVPYDLSKVFFITTANTLQTIPRPLLDRMEVIEIPG.................... 287
24 -11.7002i3b_A mol:protein length:189 Human Cancer-Related NTPase  ali model follow..  15  2......................................................................................................RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQG--EQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLIQAVRQTLSTPGTIILGTIPVP-------------KGKPLALVEEIRNDVKVFNVTKEN.................. 172
25 -11.6001ki9_A mol:protein length:192 adenylate kinase  ali model follow..  15  2....................................................................................................KNKLVVVTGVPGVGGTTITQKAMEKLSEEGINYKMVNFGTVMFEVAQEENLVEDRDQMRKLDPDT-------------QKRIQKLAGRKIAEMVKESPVVVDTHSTIKTPKGYLPGVWVLNELNPDIII----VVETSGDEILIRRLNDETRNRDLETT 145
26 -11.5001d2n_A mol:protein length:272 N-ETHYLMALEIMIDE-SENSITIVE FUSION PROTEIN  ali model follow..  16  59......................................................................................................VSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLCVVVDDIERLRFSNLVLQALLVLLKKAPPQGRKLLTTSRK----------QEMEMLNAFSTTIH............................. 188
27 -11.5003co5_A mol:protein length:143 Putative two-component system transcriptional response regulator  ali model follow..  12  25...................................................................................................KRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGV--------------LYVGDIAQYSRNIQ-TGITFIIGKAERCRVRVIASCSYAAGSDGISCEEK----------LAGLFSESVVR..................... 138
28 -11.4001nsf_A mol:protein length:273 N-ETHYLMALEIMIDE SENSITIVE FACTOR  ali model follow..  16  64......................................................................................................VSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLCVVVDDIERLRFSNLVLQALLVLLKKAPPQGRKLLTTSRK----------QEMEMLNAFSTTIH............................. 193
29 -11.4001kht_A mol:protein length:192 adenylate kinase  ali model follow..  11  2....................................................................................................KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET-------------QKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPG---LPSWVLNEL-NPDLIIVVETTGDEILMRRMSDETRVRDLD 143
30 -11.2002dr3_A mol:protein length:247 UPF0273 protein PH0284  ali model follow..  14  20..................................................................................................IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQREFIEVLRQAIRDAKRVVVDSVTTLYINKPAMSIILQLKRVLAGTGTSIFVSQVSVGERGFGGPGVEHGVDGIIGELKRSLIVWKMRGTSHSMR.............. 220
31 -11.2005c3c_A mol:protein length:281 CbbQ/NirQ/NorQ domain protein  ali model follow..  18  38..................................................................................................YEARIPMMLKGPTGCGKSRFVEHMAWKLNRPLITIACMTASDLVGRYLLDKDGTRWQD-LTVAARIGAICYLDEIVEA--RQDTIVVIHPLTDHRHPDFQIVISYN------PGYQSLMKDLKQSTKQRFG.............................. 178
32 -11.1003h86_B mol:protein length:192 Adenylate kinase  ali model follow..  12  2....................................................................................................KNKVVVVTGVPGVGGTTVTQKAMDILSEEGLNYKMVNFGSAMFDVANEEGLASDRDQMRKLD-------------PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVKTPKGYLPG---LPAWVLTEL-NPDIVIVVETDGDEILMRRLSDESRKRD.. 141
33 -11.1005j1s_A mol:protein length:284 Torsin-1A  ali model follow..  14  3................................................GQKRSLSREALQKDLDDNLFGQHLAKKII----------NAVFGFINNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIYEGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVIFIFDQM---KMHAGLIDAIKPFLDYSYQKAMFIFLSNA----------GAERITDVALD................................. 172
34 -10.8002x8a_A mol:protein length:274 NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE  ali model follow..  17  41..................................................................................................LVTPAGVLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDREQLLTEMDGLEARQQVFIATNRPLDKTLFVGLPPPADRLAILKTITKNGTKPPLDAD................... 202
35 -10.6003m6a_A mol:protein length:543 ATP-dependent protease La 1  ali model follow..  12  22MPDHVKETALKELNRYE----------KIPSSSAESSVIRNYIDWLVALPWTDETDDKLD-------LKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGLCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESERTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEK.............. 258
36 -10.5004ypl_A mol:protein length:555 Lon protease  ali model follow..  14  20MPEAVKTKALKELDRLE----------RMQQGSPEATVARTYLDWLTEVPWSKADPEVLD-------INHTRQVLDEDHYGLKDVKERILEYLAVRQLTQGLDVLVLVGPPGVGKTSLGRSIARSMNRKFHRISLGGVRDEAERTYIGAMPGKLIHAMKQVGVINPVILLDQIDKMSSDWRGASAMLEVLDPEQNNTFTDHYLDVPYDLSKVFFITTANTLQTIPRPLLDRMEVIEIPGYTNMEK.............. 260
37 -10.3006ap1_A mol:protein length:519 Vacuolar protein sorting-associated protein 4,Protein hcp1  ali model follow..  15  14................................................KKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGETELLVQMVGNDSQGVLVLGATNIP------------QLDSAIRRRFERRIY-IPLPDLAARTT.............. 207
38 -10.3002p65_A mol:protein length:187 Hypothetical protein PF08_0063  ali model follow..  20  28......................................................................................DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEQVVMFIDEIHTV--VAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALE...................................... 175
39 -10.2004r2h_A mol:protein length:210 STIV B204 ATPase  ali model follow..  20  1..................................................................................................MNPDDIVVIIGRKRSGKSYLIKHYFIPVLKAHKISYIIDDHNLLRSGSEYSKFGYNVVTLSDIVSKQSVLIIDEAYHFKYRQKVTPAIDEALHARHAGIGLILSTQRV..................................................... 140
40 -10.2005dyg_A mol:protein length:468 Transitional endoplasmic reticulum ATPase  ali model follow..  20  235..................................................................................................VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIEVERRIVSQLLTLMDGLKQRAHVIVATNRPNS--------DPALRRF-FDREVD----IGIPDATGRLE.............. 379
41 -10.2003whk_A mol:protein length:270 Proteasome-activating nucleotidase, 26S protease regulatory subunit 6A  ali model follow..  19  48..................................................................................................IDPPKGVLLYGPPGCGKTLMAKAIAHEV---NATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAI--EREVNRTLMQLLAEPRGNVKVIAATNRP-------ILDPALLRPGRFDRLIERAQILQIHSRKMTTDDDINWQELARSTD. 220
42 -10.2001jbk_A mol:protein length:195 CLPB PROTEIN  ali model follow..  20  28......................................................................................DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDNVILFIDELHTM--KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALE...................................... 174
43 -10.1002px0_A mol:protein length:296 Flagellar biosynthesis protein flhF  ali model follow..  12  1...MGSSPKIEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLTEENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKT-LAKLAAISMLEKHKKIAFITTDTYVEQLKTCYTKEEFQQAKELF-SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSLVLSATAKYEDMKHIVKPVNQYIFTKIDETTSLGSVFNI...................... 255
44 -10.1005eqt_A mol:protein length:257 Proteasome-activating nucleotidase  ali model follow..  21  36..................................................................................................IDPPKGVLLYGPPGCGKTLMAKALAHEV---NATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAI--EREVNRTLMQLLAEPRGNVKVIAATNRP-------ILDPALLRPGRFDRLIE............................. 172
45 -9.9401xwi_A mol:protein length:322 SKD1 protein  ali model follow..  21  46......................................................................................................RGILLFGPPGTGKSYLAKAVATEA-----NSTFFSISSSDLVSKWLGESEKLVKNLFQLARKPSIIFIDEIDSLCGSRSETEFLVQMVGVDNDGILVLGATNIPWV-----------LDSAIRRRFEKRIY-IPLPEPHARAA.............. 186
46 -9.9405ubv_A mol:protein length:246 ATPase domain of i-AAA protease  ali model follow..  18  1..........................................................................SNARFSDVHGCDEAKEELQELVEFLRNPEKVLLVGPPGTGKTLLARAVAGEAGVPFFYMSGSEFDEIYVGVGAKRVRELFNAAKAK---APSIVFIDELDAIGGRRNSRD------TYVRQTLNQLLTEMDGFAQNSGVIILGATNFPESLDKAL.............................. 158
47 -9.9103upu_A mol:protein length:459 ATP-dependent DNA helicase dda  ali model follow..  16  7.......................................................................GLVPRGSHMTFDDLTEGQKNAFNIVKAIKEKKHHTINGPAGTGATTLTKFIIEALISTGET-----------GIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSM---------DRKLFKILLSTIPPWCTIIGI-GDNKQI............... 161
48 -9.8403eie_A mol:protein length:322 Vacuolar protein sorting-associated protein 4  ali model follow..  20  52......................................................................................................SGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARKPSIIFIDQVDALTGTRGETELLVQMVGNDSQGVLVLGATNIPWQ-----------LDSAIRRRFERRIY-IPLPDLAARTT.............. 191
49 -9.8301ixz_A mol:protein length:254 ATP-dependent metalloprotease FtsH  ali model follow..  22  12...........................................................................KVTFKDVAGAEEAKEELKEIVEFLKNPSGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRH---APCIVFIDEI---AVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL.............................. 171
50 -9.8203a4l_A mol:protein length:260 L-seryl-tRNA(Sec) kinase  ali model follow..  15  1..................................................................................................MGDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKKKSTYRLIDSALKNYWVIVDDTNYY---NSMRRDLINIAKKYNKNYAIIYLK........................................................ 107
51 -9.8104kfr_A mol:protein length:212 Genome packaging NTPase B204  ali model follow..  17  1..................................................................................................MNPDDIVVLVGRKKSGKSYLIKHYFIPVLKAHKISYIIDDHNLLRSGSEYSKFGYNATSLSDIVSKTTVLIIDEAYHFKYKQKVTPAIDEALHARHAGLGLILSTQRVYDLMPIVYKQ---ADLIIMFYTREPNELRWISK.................... 170
52 -9.8003llm_A mol:protein length:235 ATP-dependent RNA helicase A  ali model follow..  18  70...............................................................................................LEAISQNSVVIIRGATGCGKT--AVSVAERVAFEGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTD---VLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPII....................................... 233
53 -9.7903n70_A mol:protein length:145 Transport activator  ali model follow..  13  22...................................................................................................ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE--FVYRELTPDNAPQLNDFIALAQ----------TLVLSHPEHLTREQQYH--LVQLQSQEHRPFRLIGIGDTSLVE--------LAASNHIIAELYYCFAMTQIA..................... 140
54 -9.7703h4m_A mol:protein length:285 Proteasome-activating nucleotidase  ali model follow..  20  2................................................................RAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIALTGGDREVQRTLMQLLAEARGDVKIIGATNRP-------ILDPAILRPGRFDRIIERLEILKIHTRKMNLAEDVNLEEIAKMTE. 220
55 -9.7602rko_A mol:protein length:331 Vacuolar protein sorting-associated protein 4  ali model follow..  21  55......................................................................................................SGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARKPSIIFIDEVDALTGTRGETELLVQMVGNDSQGVLVLGATNIPWQ-----------LDSAIRRRFERRIY-IPLPDLAARTT.............. 194
56 -9.7601lv7_A mol:protein length:257 FtsH  ali model follow..  16  8...........................................................................KTTFADVAGCDEAKEEVAELVEYLREPSGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA---APCIIFIDEI---AVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPAL.............................. 167
57 -9.7405w0t_A mol:protein length:304 Protein MSP1  ali model follow..  17  78......................................................................................................SGVLLYGPPGCGKTMLAKALAKES---GANFISIRMSSIMDKWYGESNKIVDAMFSLANKLQPCIIFIDEIDSFLRERSSTD-FMTLWDGLLNNGRVMIATNRIND-----------IDDAFLRRLPKRFL-VSLPGSDQRYK.............. 216
58 -9.7303adb_A mol:protein length:259 L-seryl-tRNA(Sec) kinase  ali model follow..  16  8........................................................................................................IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKKKSTYRLIDSALKNYWVIVDDTNYY---NSMRRDLINIAKKYNKNYAIIYLK........................................................ 108
59 -9.7206mdm_A mol:protein length:768 Vesicle-fusing ATPase  ali model follow..  17  268..................................................................................................CKHVKGILLYGPPGCGKTLLARQIGKMLVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANSGLHIIIFDEIDAIGVHDTVVNQLLSKIDGVEQLNNILVMTNRP-------LIDEALLRPGRLEVKME----IGLPDEKGRLQ.............. 423
60 -9.7002qz4_A mol:protein length:262 Paraplegin  ali model follow..  21  2...........................................................................GVSFKDVAGMHEAKLEVREFVDYLKSPEGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARAR---APCIVYIDEIDAVGKKRSTTMS-----TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGAL.............................. 162
61 -9.6901ye8_A mol:protein length:178 Hypothetical UPF0334 kinase-like protein AQ_1292  ali model follow..  15  2.......................................................................................................KIIITGEPGVGKTTLVKKIVERL-KKRTGFRIITTEGKKKIFSSKFFTSKKRAYREAKKDRRKVIIIDEIGKMELFSKKRDLVRQIMHDPNVNVVATIPIR---------------DVHPLVKEIRRLAVLIELTPEN.................. 164
62 -9.6403b6e_A mol:protein length:216 Interferon-induced helicase C domain-containing protein 1  ali model follow..  18  47....................................................................................................EGKNIIICLPTGSGKTRVAVYIAKDHLDKSCDIIISTAQILENSLLNLENGEDAGVQLSDFS----LIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRL............................................................ 197
63 -9.6303eih_A mol:protein length:340 Vacuolar protein sorting-associated protein 4  ali model follow..  20  70......................................................................................................SGILLYGPPGTGKSYLAKAVATEA-----NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARKPSIIFIDQVDALTGTRGETELLVQMVGNDSQGVLVLGATNIPWQ-----------LDSAIRRRFERRIY-IPLPDLAARTT.............. 209
64 -9.6304d80_A mol:protein length:316 AAA ATPASE, CENTRAL DOMAIN PROTEIN  ali model follow..  17  48...............................................................................DVKEALKEAVVYPSKRPDLFPLGRGILLYGPPGCGKTMIAAAV---ANELDSEFIHVDAASIMSKWKNVAKIFKTARELSKKENKPAIIFIDELDALLASYTSEVGGEARVRNQFSKVYVIGATNKPWR-----------LDEPFLRRFQKRIY-ITLPDKAHRLE.............. 218
65 -9.6203hu1_A mol:protein length:489 Transitional endoplasmic reticulum ATPase  ali model follow..  20  235..................................................................................................VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIEVERRIVSQLLTLMDGLKQRAHVIVATNRPNS--------DPALRRF-FDREVD----IGIPDATGRLE.............. 379
66 -9.6006HD0 Entity 1(prereleased)  ali follow..  20  235..................................................................................................VKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIEVERRIVSQLLTLMDGLKQRAHVIVATNRPNS--------DPALRRF-FDREVD----IGIPDATGRLE.............. 379
67 -9.6001sxj_B mol:protein length:323 Activator 1 37 kDa subunit  ali model follow..  11  26.....................................................................................NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYAD--------VLELNASDDRGVVRNQIKHFAQKKLIVILDEA---SMTAGAQQALRRTMELYSNSTRFAFACNQPLQSQCAILRYSKLSDEDVLKRLIIKLEDVKYTNDGLEAIIFTAEGDMRQA... 205
68 -9.5901iqp_A mol:protein length:327 RFCS  ali model follow..  15  30.....................................................................................QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFL-------ELNASDERGVIREKVKEFARTKKIIFLDEA---ALTQDAQQALRRTMEMFSSNVRFILSCNYPIQSRCAIFRFRPLRDEDIAKRLIAENEGLELTEEGLQAILYIAEGDMRRA... 208
69 -9.5804lgm_A mol:protein length:295 Vps4 AAA ATPase  ali model follow..  16  33...............................................................................DVKEALREAIIYPTKRPDLFPLGRGILLYGPPGCGKTMIAAAVANEI---DSIFMQLDAASVMSKWKNVANVFKMAREESKKQNKPAIIFIDQLDALLGVYSTEVGGEARVRNQFYKVYVIGATNKPWR-----------LDEAFLRRFQKRIY-VPLPDYEQRLS.............. 203
70 -9.5506blb_A mol:protein length:355 Holliday junction ATP-dependent DNA helicase RuvB  ali model follow..  14  8...........................................DRLISAVSGRERDEQLDRAIRPLKLA--------DYIGQPSVREQMELFIHAARGRQEADHTLIFGPPGLGKTTLANIIAQEM------------VSIKSTSGPVLERPGDLAALLTNLEAGDVLFVDEI---RLSPIVEEVLYPAMED--GPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQRLEFYNVEDLATIVSRSAGILGLEIEP 210
71 -9.5401in4_A mol:protein length:334 HOLLIDAY JUNCTION DNA HELICASE RUVB  ali model follow..  15  6.................................................TPERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRG-------EVLDHVLLAGPPGLGKTTLAHIIASEL------------TNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI---RLNKAVEELLYSAIED--GPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRF............................... 171
72 -9.5201sxj_C mol:protein length:340 Activator 1 40 kDa subunit  ali model follow..  15  30.....................................................................................QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN--------VLELNASDDRGDFASTRQIFSKGFKLIILDEA---AMTNAAQNALRRVIERYTKNTRFCVLANYALLSQCTRFRFQPLPQEAIERRIVLVHEKLKLSPNAEKALIELSNGDMRRV... 208
73 -9.5102ja1_A mol:protein length:197 THYMIDINE KINASE  ali model follow..  13  14.........................................................................................................VICGSMFSGKSEELIRRVRRTQFAKQHAIVFKVVSHNGLKVKAVPVSASKDIFEHITEELDVIAIDEVQFF------DGDIVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLM-AIAEHVTKLQAVCSVCGSPASRTQRLIDGEPAAFDDP 171
74 -9.4504o0m_A mol:protein length:524 Circadian clock protein kinase KaiC  ali model follow..  12  161.VRREIFRLAFRLKQLGVTTITERVDEYGPVARFGVEEFVSDNVVILRNVLEGERRRRTVEILKLRGTTHMKGEYPFTINNGINIFPLGAMRLTQRS-FFKDSIILATGATGTGKTLLVSKFLETGCQQGERALLFAYEESRAQLSRNASSEDHLQIIKSEIADPSRVAIDSLSALARNNAFRQFVIGVTGFAKQEETGFFTNTTDQFMGSNSITESSTITDTILGEMSRAINVFKMRGSWH................. 463
75 -9.4502chq_A mol:protein length:319 REPLICATION FACTOR C SMALL SUBUNIT  ali model follow..  15  22.....................................................................................QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM-----NASDERGIDVVRHKIKEFARTAKIIFLDEA---ALTADAQAALRRTMEMYSKSCRFILSCNY---------------VSRIIEPIQSRCAVFRFK..................... 159

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 7 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.