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Query: gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKISSFISTSLPLPTSVSGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKPVVTPAPTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLMLast
1 -60.1001hy5_A mol:protein length:136 YERSINIA PESTIS VIRULENCE PROTEIN YOPE  ali model follow..  100  1.........................................................................................APTPAQMPSPTSFSDSIKQLAAETLPKYMQQLNSLDAEMLQKNHDQFATGSGPLRGSITQCQGLMQFCGGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGVDLTQAANEIKGLAQQMQKLLSLM 130
2 -48.1001r4t_A mol:protein length:153 exoenzyme S  ali model follow..  24  2..........................................................................................SASSAVVFKQMVLQQALPMTLKGLDK-ASELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAGSQEESRIQAGRLLERSIGGIALQQWGTTGGAASQLVASPELRREITDQLHQVMSEVALLRQAV 132
3 -23.8001g4u_S mol:protein length:383 PROTEIN TYROSINE PHOSPHATASE SPTP  ali model follow..  30  1...............................................................................................NDVGAESKQPLLDIALKGLKRTLPQLEQMDGNSLRENFQEMASGNGPLRSLMTNLQNLNKIPEKQLNDYVTTLTNIQVGVARFSQWGTCGGEVERWVASTHELTQAVKKIHVIAKELKNV.... 123
4 -11.4004jmf_A mol:protein length:50 Exoenzyme T  ali model follow..  26  1.............................EARQVATPREAQQLAQRQEAPKGEGLLSRLGAALARPFVAIIEWLGKLLG............................................................................................................................................ 50
5 -10.3001l2w_I mol:protein length:69 Outer membrane virulence protein yopE  ali model follow..  100  2.................SGSSSVGEMSGRSVSQQTSDQYANNLAGRTESPQGSSLASRIIERLSSVAHSVIGFIQRMFSEGSHKP...................................................................................................................................... 69
6 -7.8204b8c_D mol:protein length:727 GLUCOSE-REPRESSIBLE ALCOHOL DEHYDROGENASE TRANSCRIPTIONAL EFFECTOR  ali model follow..  10  130VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPK-----ELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL---------TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS----------------CFQLKYFYFFDNMVTTLPWEFGNLCNL. 318
7 -7.3605z0r_A mol:protein length:445 Extracellular solute-binding protein family 1,viral genome protein  ali model follow..  20  356...........................................................................................................QTVDEALKDAQTRITVSPFGGLKRLPAGLLLGHGPIRMVLAILAFLR-------------TAIKPSLGL-INRWGSVG-------------KEAMEIIKKFKKDLAAMLRII 442
8 -7.2105ygh_A mol:protein length:76 Capsid protein  ali model follow..  19  6..............................................................................................................................GGLKRLPAGLLLGHGPIRMVLAILAFL-------------RFTAIKPSLGLINRWGSVG------------KKEAMEIIKKFKKDLAAMLRII 73
9 -7.1901sfk_A mol:protein length:76 Core protein  ali model follow..  13  6..............................................................................................................................TGLKRAMLSLIDGRGPTRFVLALLAFF-------------RFTAIAPTRAVLDRWRSVN------------KQTAMKHLLSFKKELGTLTSAI 73
10 -6.8001r6r_A mol:protein length:100 Genome polyprotein  ali model follow..  17  5......................................................................................................RKKARNTPFNMLKRERNRVSTVQQL-TKRFSLGMLQGRGPLKLFMALVAFLR-------------FLTIPPTAGILKRWGTIK-------------SKAINVLRGFRKEIGRMLNIL 95

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 0 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.