current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MDKNKGIVFPPFSINIANIFVPDLSGANRFLACSLLEFLTYLSSVLLLMLWKILNIYIYGLMQHSRNQNIIAKRYIVYTVLFILKTANIRANPVTLSPLast
1 -8.0005z10_A mol:protein length:2547 Piezo-type mechanosensitive ion channel component 1  ali model follow..  15 1685..........................AHSELLCYFIIILNHMVTASAASLVLPVLVFLWAMLTIPRPSKRFWMTAIVFTEVMVV.............. 1742
2 -6.4301yp5_A mol:protein length:58 Myosin-5 isoform  ali model follow..  10  1.....................PMFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYM...................... 55
3 -6.3801gzm_A mol:protein length:349 RHODOPSIN  ali model follow..  20  71..............TPLNYILLNLAVADLFMVCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVG. 175
4 -6.0906c6l_O mol:protein length:85 V-type proton ATPase subunit f  ali model follow..  1....................MRPVVSTGKAWCCTVLSAFGVVILSVIAHLFNTNHESFVGSINDPEDGPAVAHTVYLAALVYLV.............. 64
5 -6.0202j05_A mol:protein length:65 RAS GTPASE-ACTIVATING PROTEIN 1  ali model follow..  14.............................YTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV...................... 60
6 -5.8802gqi_A mol:protein length:71 Ras GTPase-activating protein 1  ali model follow..  16.............................YTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV...................... 62
7 -5.8402m51_A mol:protein length:62 Ras GTPase-activating protein 1  ali model follow..  11.............................YTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV...................... 57
8 -5.5902z73_A mol:protein length:448 Rhodopsin  ali model follow..  14  67..............TPANMFIINLAFSDFTFSCKVYGFIGGIFGFMSIMTMAMISIDRYVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFG. 173
9 -5.4605glh_A mol:protein length:498 Endothelin Receptor Subtype-B  ali model follow..  20  72..............NGPNILIASLALGDLLHICKLVPFIQKASVGITVLSLCALSIDRYAVASWSRIKGIGVPKWTAVEIVLIWVVSVVLAVPEAI.. 176
10 -5.4405nj6_A mol:protein length:437 Proteinase-activated receptor 2,Soluble cytochrome b562,Proteinase-activated receptor 2  ali model follow..  13  55..............APAVIYMANLALADLLSVCNVLIGFFYANMYCSILFLTCLSVQRAWEIVNPMGHSRKKANIAIGISLAIWLLILLVTIPLYV.. 158

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 4 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.