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Query: gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MYKLSELADEDIYNIASYTIRHFGVTQAKLYHENLAKVFELLAKNPELGAECNWICSDIRRFQYKKHGIYYITLSNDILISRVLHQSIDIDVQDFPEHELast
1 -60.0003kxe_A mol:protein length:110 Toxin protein parE-1  ali model follow..  30  12.YRLSRRAKADLDDIWTYSEQRWGVEQAADYARELQATIEMIAEHPGMGQPDENLRAGYRRCASGSHVVFYRV-GVRVEIIRVLHQSMNARAHL..... 103
2 -49.5005ceg_B mol:protein length:117 Plasmid stabilization system  ali model follow..  20  13.LVWSPTAKADLIDIYVMIGS-ENIRAADRYYDQLEARALQLADQPRMGVRRPDIRPSARMLVEAPFVLLYETVPDTVEIVRVVDGRRDLNRLF..... 111
3 -40.0005cw7_B mol:protein length:100 Plasmid stabilization protein ParE  ali model follow..  19  4.VLWLESADTDLDDITSYIARF-DIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVEVVNVIHARRQFP........ 92
4 -38.6005czf_C mol:protein length:111 Plasmid stabilization protein ParE  ali model follow..  19  17.VLWLESADTDLDDITSYIARF-DIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVEVVNVIHARRQFP........ 105
5 -13.7003bpq_B mol:protein length:88 Toxin RelE3  ali model follow..  14  4..LFAKTFVKDLKHV------------PGHIRKRIKLIIEECQNSNSLNDLKLDIKKNYYRIRVGNYSIGIEVNGDTIIFRRVLHRK............ 81
6 -12.0003g5o_B mol:protein length:102 Uncharacterized protein Rv2866  ali model follow..  14  15..RFTTTARRDLHKLPPRILAA------------VEFAFGDLSREPLVGKPLRRELAGTFSARRGTYRLLYRIDDEHVVILRVDHRA............ 91
7 -11.5003oei_C mol:protein length:96 RelK (Toxin Rv3358)  ali model follow..  10  6VRSVDPDAWEDFLFW---------LAADRKTARRITRLIGEIQRDPFSGIGKPEPLQGWSRRIDDEHRLVYRAGDDEVTMLKA-H.............. 89
8 -10.4001wmi_A mol:protein length:90 hypothetical protein PHS013  ali model follow..  12  6..KIHKQVVKALQSL------------PKAHYRRFLEFRDILEYEPDVIKLEGTGDLDLYRARLGDYRVIYSVNWKDIKILKLKPRG............ 86
9 -10.2002a6q_E mol:protein length:84 Toxin yoeB  ali model follow..  14  3.LIWSEESWDDYLYW---------QETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHWSRRITEEHRLVYAVTDDSLLIAAC................ 80
10 -9.6002khe_A mol:protein length:89 Toxin-like protein  ali model follow..  5.IEFDPRAEKELEKL--------DREVARRILRFLRERVATLEDRSLGEPLRGPELGRFWKYRVGDYRLICHIQDREVLVLRVGHAR............ 85
11 -9.3004fxe_D mol:protein length:95 mRNA interferase RelE  ali model follow..  6..DFDERALKEWRKL------------GSTVREQLKKKLVEVLESPRINKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKAE.......... 82
12 -9.1802kc8_A mol:protein length:98 Toxin relE  ali model follow..  9..DFDERALKEWRKL------------GSTVREQLKKKLVEVLESPRINKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKAE.......... 85

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.