current user: public

Please be advised that we have recently moved our server to a new location. We tried our best to fully test all functions on the website, but if something does not work for you please let us know.

Query: gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320
# Score Template Links and tools%idFirst MKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTIVLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSFLTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQMLWLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRCIKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTHKIMKQKQEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSVPESLVKQIEELLNTYAKEHSLLast
1 -46.6003mky_B mol:protein length:189 Protein sopB  ali model follow..  41  2................................................................................................................................................GSSSSGLVPRGSHYRPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINTAKLPKSVVALFSHPGELSARSGDALQKAFTDKEELLKQQASNLHEQKKAGVIFEADEVITLLTSVLKTSSASRTSAPGATVLYKGDKMVLNLDRSRVPTECIEKIEAILKELEKPA.. 182
2 -43.1004umk_A mol:protein length:240 PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB  ali model follow..  16  1MAKNKVLGRGLADIFPEINEVYEQGLYERAN-----------------------------RVVELGIDEVM------PNPYQPRKVFSEDSLEELAQSIKEHGLLQPVLVVSENGRYHLIAGERRLRASKLAKMTIKAIVVDIEQEKMREVALIENIQREDLNPLELARSYKELLESYQMTQEELSKIVKKSRAHVANIMRLLTLSSKVQNALLE-EKITSGHAKVLVGLDGEKQELILNSI.............................................................................. 207
3 -40.5001vz0_A mol:protein length:230 Chromosome-partitioning protein Spo0J  ali model follow..  19  2......................................SRKPSGLGRGLEALLPKTGAGVVRLPLA--------SIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERRYRAALMAGLEVPAVVKDLTDREALELALVENLQREDSPVEEARGYQALLE--MGLTQEEVARRVGKARSTVANALRLLQLPPEALEALER-GEITAGHARALLMLEPEDRLWGLKEI.............................................................................. 196
4 -35.0001zx4_A mol:protein length:192 Plasmid Partition par B protein  ali model follow..  14  1..........................................................................................................................................................DVQTALQSIREIGLRLMRMKNDGM--SQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEMGQNISPEINDILSINEMAEDEVKNKILRLITKEASLLTDKGSKDKDRFARKRVKGRAFSYEFNRLSKELQEELDRMIGHILRKS.. 185
5 -34.9003vwb_A mol:protein length:143 Virulence regulon transcriptional activator virB  ali model follow..  15  1..............................................................................................................................................MGSSSSGLVPRGSHMAKEHSIRELGIGLNFLKVSGM--SYKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKKANESLSSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKNRKQN.......................................... 137
6 -23.7001yzs_A mol:protein length:121 sulfiredoxin  ali model follow..  24............................................................AVHNVPLSVLIR---------PLPSVLDPAKVQSLVDTIREDPDSVPPIDAQGGDYFYSFGGCHRYAAYQQLQREIPAKLVQSTLSDLRVYASTPDLQ.................................................................................................................................................................. 121
7 -22.8003hy2_X mol:protein length:110 Sulfiredoxin-1  ali model follow..  13............................................................AVHCVPLSVLIR---------PLPSVLDPAKVQSLVDTIREDPDSVPPIDAQGGDYFYSFGGAHRYAAYQQLQREIPAKLVQSTLSDLRVYASTPDLQ.................................................................................................................................................................. 110
8 -22.6002rii_X mol:protein length:110 Sulfiredoxin-1  ali model follow..  13............................................................AVHNVPLSVLIR---------PLPSVLDPAKVQSLVDTIREDPDSVPPIDAQGGDYFYSFGGCHRYAAYQQLQREIPAKLVQSTLSDLRVYASTPDLQ.................................................................................................................................................................. 110
9 -22.2001xw3_A mol:protein length:110 SULFIREDOXIN  ali model follow..  13............................................................AVHNVPLSVLIR---------PLPSVLDPAKVQSLVDTIREDPDSVPPIDAQGGDYFYSFGGCHRYAAYQQLQREIPAKLVQSTLSDLRVYASTPDLQ.................................................................................................................................................................. 110
10 -21.8005k5a_B mol:protein length:300 ParB domain protein nuclease  ali model follow..  12  5.......................................................TELTYTEEVVSIEKLK------EDDEFKTLVPSNNSREDLEKSLREKSQIFPLIADR---DYVLIDGYTRLDIMKKLGFEVKILKYDFDSQKAYELIWTFNGVRRQLNKNERLALFQKIADRIAKIQASKNKTEETESKQIEENEEFVTLDDGTTISALEYERILKELDKENKALSESDKRKMAILLLKYVTDQKYKVPLDQAFRIYTRVKDLGILDKLKDLAPALRDPLITTREGRKIILNDEYRDLLEKIISKQYTTERA... 280
11 -21.3001r71_A mol:protein length:178 Transcriptional repressor protein korB  ali model follow..  13  1............................................................................................................................RYRGSKWAGKKIPAFIDNDYNEADQVI---ENLQRNETPREIADFIGRELAKGK--KKGDIAKEIGKSPAFITQHVTLLDLPEKIADAFNTGRVRDVTVVNELVTAFKKRPEEVEAWLDDDTQEITRGTVKLLREFLDEKGRDPNTVDA............................................... 146
12 -20.6005k5d_B mol:protein length:300 ParB domain protein nuclease  ali model follow..  12  1......................................................GSHMTELTYTEEVVSIEK---LKEDDEFKTMVPSNNSREDLEKSLREKSQIFPLIADR---NYVLIDGYTRLDIMKKLGFEVKILKYDFDSQKAYELIWTFNGVRRQLDKNERLALFQKIADRIAKMQASKNKKIVSHATQFSATESKQIEENEEFVTLDDGTTISALEYERILKELDKENKALSE-LLKYVTDQKYKVPLDQAFRIYTRVKDMGILDKLKDLAPALRDPLITTREGRKIILNDEYRDLMEKIISKQYTTERA... 280
13 -19.8005uje_A mol:protein length:242 SbnI protein  ali model follow..  4.......................................................NHIHEHLKLVPVDKI-----------DLHETFEPLRLEKTKSSIEADDFIRPILVTAQHGRYMVIDGVHRYTSLKALGCKVPVQEIHETQYSISTWQHKVPFGVWWETLQQEHRLPWTTETRQEAPFITMCHGDTEQYLYTKDLGAHFQVWEKVVASYSGCCSVERIAQGTYPCLSQQDVLMKYQ-------------PLSYKEIEAVVHKGETVPAGV------TRFNISGRCLNLQVPLALLKQDDDVEQLRNWKQFLADK.. 240
14 -17.9005ujd_A mol:protein length:256 Siderophore biosynthesis protein SbnI  ali model follow..  10  4.......................................................KQIYDTLQLIPVDKI-----------DLHEAFEPSRLEKTKESIAKEQHLRPVLVVKLFGRYMVIDGVHRFMSLKALGCEIPVQVIQRTQYSIGSWHHKIPNGAWCEGLTDEELLPWTTEVRDETPFITMCDQQTEHYLYVADLTDKLDIWKKVVNSYSASCNVERVPHSACLCLDSNDI-----------------QPLQIGEIEAVVQRGQTVPAGVTRFNIAGRCL------NLQVPLHLLKNSNLEQWHTFLQKKIES... 242
15 -17.9001vk1_A mol:protein length:242 Conserved hypothetical protein  ali model follow..  17  12.......................................................PVKKVEYVFIELDKM-----------KPHEQLVQRELEDFIESVTGSGIFKPMLLAKITDEYLIVDGHHRWAGLQKLGAKAPSVILDYFDEGVK........................................................................................................................................................................... 98
16 -17.7005x0b_A mol:protein length:242 Free serine kinase  ali model follow..  11  12.......................................................PTKKVDYVFIELDKM-----------KPHEQLVQKELEAFIESVTGSGIFKPMLLAKVPGMYLIVDGHHRWAGLQKLGAKAPSVILDYFSDDVKVFKGDLNEVVERLKKEGLEVIEDPEAEEKAERGEIAFALVGEKSFAIPGGLEEQKKVSKVLDEMSVEGKIE.................................................................................................... 175

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 4 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.