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Query: gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .
# Score Template Links and tools%idFirst MIMTQPKQTKRRFSPEFKLEAIEQVVKYQRSTIEVARALELDPSQLRKWIRQYKEEVSGMTPDNPALTPEQREIQSLRAQIKRLEMEKEILKQAAVLMSEFPIKSLRLast
1 -40.8002jn6_A mol:protein length:97 Protein Cgl2762  ali model follow..  18  2........PTKTYSEEFKRDAVALYENSDASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRARTRHPAESC............ 89
2 -35.6002rn7_A mol:protein length:108 IS629 orfA  ali model follow..  23  2.......TKNTRFSPEVRQRAVRMVLEQWATICSIAPKIGCTPETLRVWVRQHERDTGG--DDGGLTTAERQRLKEPERENRELRRSNDILRLASAYFAKAE..... 101
3 -25.1002oa4_A mol:protein length:101 SiR5  ali model follow..  14  26....LPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDALKVTALKKYRQLL.................................. 94
4 -24.6002jrt_A mol:protein length:95 Uncharacterized protein  ali model follow..  13  25....LPPLDTRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVAAHGEKALKVTMIQKYRQL................................... 92
5 -17.3002elh_A mol:protein length:87 CG11849-PA  ali model follow..  29  15....KGKRPLRSLTPRDKIHAIQR-IHDGESKASVARDIGVPESTLRGWCKN....................................................... 61
6 -16.3002glo_A mol:protein length:59 brinker CG9653-PA  ali model follow..  27  2........SRRIFTPHFKLQVLESYRNDNDNQRATARKYNIHRRQIQKWLQC....................................................... 48
7 -12.6002jml_A mol:protein length:81 DNA BINDING DOMAIN/TRANSCRIPTIONAL REGULATOR  ali model follow..  17  6.............................LRIRTIARMTGIREATLRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEGLSVSEAIAQVKTEPPRE.. 81
8 -11.4002ao9_A mol:protein length:155 Phage protein  ali model follow..  20  14..MAKLDELKQKLTAKQIQAAYLLVENEKRTQDEMANELGINRTTLWEWRTK....................................................... 71
9 -11.3002cob_A mol:protein length:70 LCoR protein  ali model follow..  19  8......RGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE....................................................... 53
10 -10.9003hef_A mol:protein length:143 Gene 1 protein  ali model follow..  14  4MATEPKAGRPSDYMPEVADDICSL-LSSGESLLKVCKRPGMDKSTVFRWLAKHED.................................................... 58
11 -10.5001hcr_A mol:protein length:52 PROTEIN (HIN RECOMBINASE)  ali model follow..  12  2.........RPRAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPASSIKKR................................................. 50
12 -10.2003bd1_A mol:protein length:79 Cro protein  ali model follow..  21  1..................MNAIDIAINKLGSVSALAASLGVRQSAISNWRA........................................................ 33
13 -9.7702lvs_A mol:protein length:105 Putative uncharacterized protein  ali model follow..  12  4..............VNDSLDIVEKLYKDGVPVKEIAKRSNNSMSTVYKALEKLKRRKGRYRQHRRLTEEELATIRELYLKVYEIARQLGRPESTIYYALKKLGLKLE 105
14 -9.7605w8y_A mol:protein length:73 protein XPH1  ali model follow..  24  1..................MNAIDIAINKLGSVSALAAALGVNQSAISQWRA........................................................ 33
15 -9.6806amk_A mol:protein length:72 Putative DNA-binding protein  ali model follow..  27  17..............................TPAEVATMFRVDPKTVTRWAKA....................................................... 38
16 -9.6502ezk_A mol:protein length:99 TRANSPOSASE  ali model follow..  21  25.......SDSQRRLAEKWLPAVQAAISTKTAFATVAGHYQVSASTLRDKYYQVQ..................................................... 78
17 -9.5903hos_A mol:protein length:345 Transposable element mariner, complete cds  ali model follow..  14  1MSSFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLDE........................ 83
18 -9.4602hin_A mol:protein length:71 Repressor protein  ali model follow..  16  3.....................PEELVRHFGDVEKAAVGVGVTPGAVYQWLQ........................................................ 32
19 -9.4005af3_A mol:protein length:241 VAPBC49  ali model follow..  12  19..............................TLAEASRYLVVPRATLATWADGYERRPANA-PTGSHARLPFVGIAEAYNAFRRAGVPMQRIRPSLDWLIKN...... 104
20 -9.3206ama_A mol:protein length:71 Putative DNA-binding protein  ali model follow..  27  16..............................TPAEVATMFRVDPKTVTRWAKA....................................................... 37
21 -9.0701j9i_A mol:protein length:68 TERMINASE SMALL SUBUNIT  ali model follow..  13  4..............................NKKQLADIFGASIRTIQNWQEQ....................................................... 25

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 1 4 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.