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Query: gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNSIHGHYHIQLSNYSAGENLQSATLTEGVIGAHRVKVETALSHSNLQKKLSATIKHNQSGRSMLDRKLTSDGKANQRSSFTFSMIMYRMIHFVLSTRVPAVRESVANYGGNINFKFAQTKGAFLHKIIKHSDTASGVCEALCAHWIRSHAQGQSLFDQLYVGGRKGKFQIDTLYSIKQLQIDGCKADVDQDEVTLDWFKKNGISERMIERHCLLRPVDVTGTTESEGLDQLLNAILDTHGIGYGYKKIHLSGQMSAHAIAAYVNEKSGVTFFDPNFGEFHFSDKEKFRKWFTNSFWGNSMYHYPLGVGQRFRVLTFDSKEVLast
1 -46.5001ukf_A mol:protein length:188 Avirulence protein AVRPPH3  ali model follow..  18  4............................................................................................................................DFSVASRDVNHNNICAGLSTEWLVMSSDGDSRMDHLDYNGEGQSRGSERHQVYNDALRAALSNDDEAPFFTAS--------TAVIEDAGFSLRREPKTVHASGGSAQLGQTVAHDVAQSGRKHLLSLFANVQGHAIACSCE-GSQFKLFDPNLGEFQSSR-SAAPQLIKGLIDHYNSLNYDVACVNEFRV........ 186
2 -13.0002j7q_A mol:protein length:232 MCMV TEGUMENT PROTEIN M48 ENCODED UBIQUITIN- SPECIFIC PROTEASE, M48USP  ali model follow..  3...............................................................................................................IVRASRDQSA-------PVYGPRAGSQCMSNCFTFLHTLDSGARLDAIADEKVKRQALTDHPYRLGTEIPTVIETPAGITGHALSRPFN-----------------TAETQDLGGYKCLGILDFLTYARGKPLPVYIIVT----GVHTRGVIVA-RGATYVFDPH-AVYVCDDFTEAISALSFFTEMIGDFYYD................. 194
3 -11.6001cv8_A mol:protein length:174 STAPHOPAIN  ali model follow..  11  1....................................................................................................................YNEQYVNKLENFKRETQGNNGWCAGYTMSALLNATYNTNKYHA-------------------------AVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNK------IAILGSRVESGHAMAVV-NGQEVIIIWNPWDNGFMTQDAKNNVIPVSN............................ 161
4 -11.5001pxv_A mol:protein length:183 cysteine protease  ali model follow..  19..................................................................................................................................EQQFDNSWAAGFSMAALLNATKNTDTYNA------------------------HDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVS-NDPHLGHALAVVINDQEKLIYWNPWDTELSIQDADSSLLHLSF............................ 164
5 -11.0001y4h_A mol:protein length:188 cysteine protease  ali model follow..  10  24..................................................................................................................................EQQFDNSWCAGFSMAALLNATKNTDTYNA-------------------------DIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNV------IMILAQSVSQGHALAVVINDQEKLIYWNPWDTELSIQDADS................................... 162
6 -9.0004wx4_A mol:protein length:205 Protease  ali model follow..  19  51.............................................................................................................................................................................................................................................................TGGVHWLAFGWNRSRTCYMFDP-FGFSDRRLKQIYSFEYEAMLRRS....................... 96
7 -8.2801avp_A mol:protein length:204 ADENOVIRAL PROTEINASE  ali model follow..  17  50.............................................................................................................................................................................................................................................................TGGVHWMAFAWNRSKTCYLFEP-FGFSDQRLKQVYQFEYESLLRRS....................... 95
8 -8.2102btw_A mol:protein length:254 ALR0975 PROTEIN  ali model follow..  32...................................................................................................PNLIGFNSNEGEKLLLTSRSREDFFPLSMQFVTQVNQAYC-GVASIIMVLNSLGINAPETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYGVKVKVNHASD----------TNIEDFRKQVAENLKQDGNFVIVNIGQERGGHPLAAYNEQTDRFLIMDVSRYKYVWVKTTDLWKAMNTV-------DSVSQKTRGFVFVSKTQDD. 244
9 -8.1203bba_A mol:protein length:251 interpain A  ali model follow..  11  8.......................................................................................................KYAAEVSTLLTTTWGQQMPYNKL-KTKKGRLITG-CVATATAQVLNYFKNTTYDWANMKDNYSGNYTEAEANAVATLMLHCGVASEMQYGGSGAYMTDCAAGLRTYFGFTDAEYITRANYTDEQWMDIVFSELTKGHPLIYGGVSPGSMGQDAGHAFVI--DGYNKAGLVSVNWG---WNGDVD---YKIDLLNPGNMYSFTAEQDMVRGVYGKPLED. 251
10 -8.0803erv_A mol:protein length:236 putative C39-like peptidase  ali model follow..  11  30.....................................................................................................................EKVILSNVPFIQQLPELDRG-CEVTSLAMMLQYAGITVDKMKLANEIKKVDFMNDGV---------GNPNEGFVGNIYTFSESGYGVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQ---------DVSITYNEHCVVLIGYDQESVYIRDPLKDSLDVKPREKFEQAWVQM........................... 216

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 0 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.