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Query: gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTINIKTDSPIITTGSQLDAITTETVKQSGEIKKTEDTRHEAQAIKSSEASLSRSQVPELIKPSQGINVALLSKSQGDLNGTLSILLLLLELARKAREMGLQQRDIENKATITAQKEQVAEMVSGAKLMIAMAVVSGIMAATSTVASAFSIAKEVKIVKQEQILNSNIAGREQLIDTKMQQMSNIGDKAVSREDIGRIWKPEQVADQNKLALLDKEFRMTDSKANAFNAATQPLGQMANSAIQVHQGYSQAEVKEKEVNASIAANEKQKAEEAMNYNDNFMKDVLRLIEQYVSSHTHAMKAAFGVVLast
1 -7.1506b87_A mol:protein length:111 TMHC2_E  ali model follow..  18  28.................................................................................LIVLLWLLQQLKELLRELERLQREGSSDEDVRELLREIKELVENIVYLVIIIMVLVLVIIALAVTQ............................................................................................................................................................... 93
2 -7.1004tql_A mol:protein length:247 Three helix bundle  ali model follow..  10...........................................................................KQMVQELEKARDRMEKLYKEMVELIQKAIE-LMRKIFQEVKQEVEKAIEE-----MKKLYDEAKKKIEQMIQQIKQGGDKQKMEELLKAKEEMKKVKDKMEKLLEKLKQIMQEAKQKKQLKEEMKKMKEKMEKLLKEMKQRMEEVKKKMDGDDELLEKIKKNIDDLKKIAEDLIKKAEENIKEAKKIAEQLVKRAKQLIEKAKQVAEELIKKILQLIEKAKEIAEKVLKGL 240
3 -6.4702qzv_A mol:protein length:873 Major vault protein  ali model follow..  679..........................................................................................NSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAV------------ESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGP-----GTIRDLAVAGPEMQVKLLQSDGSSPINLFSTAFGLLGLGSDGQPPAQK............. 873
4 -6.1306bp7_A mol:protein length:934 Major vault protein  ali model follow..  11  724..........................................................................RDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLE------------LEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINLFSTAFGLLGLG...................... 925
5 -5.8903l39_A mol:protein length:227 Putative PhoU-like phosphate regulatory protein  ali model follow..  21...................................................................................KFFPLLKQLSDVLSASSVLLVESDYYKQIKDMEREGDRLTHLIFDELSTTFIEDIHDLASCMDDVIDGINSSAKRIVIYNPRPISESGKE------------------------------------SRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDVYELFITKLFEEEKDCIELIK------IKEIMHELEKTTDAAEHVGKILKNLI 217
6 -5.6502pgc_A mol:protein length:207 uncharacterized protein  ali model follow..  19..........................................................................................................YRETMARLMSSYSKDLNAGAKGTRFGSIGTG-----AGSLIFIQFYDDLTGYQKALEIQSKSSVFKEIMDSGKANIYLRNISTSLPTKFEQSYEHPKYIVLTRAEAAMSDKDKFLNCINDTASCFKDNGALTLRFGNLLTG--------SNVGNYLLGVGYPSMEAIEKTYDELLAH--SSYKELMTFAKVNMRNIIKIL 207
7 -5.6406h7w_B mol:protein length:368 Putative vacuolar protein sorting-associated protein  ali model follow..  11  94..LNKIAAHPTLQLDADLKLFLESESFNIDVKHKERKEPPLGESKGVFGSLGFGGGGNKFVEQDDWFHDR-RVYLDALENQLKALLKAMDNMVAQRKAMAEAAADFSASLHALSTVELSPTLSGP-------------LDALSELQLAIRDVYERQAQQDVLTFGIIIEEYIRLIGSVKQAFSQR---------------------QKAFHSWHSAESELMKKKAAQDKLLRQGKTQQDRLNQVNAEVIDAERKVHQARLLFEDMGRLLRSELDRFEREKVEDFKSGVETFLESAVEAQKELIEK. 361
8 -5.2302ym0_A mol:protein length:233 CELL INVASION PROTEIN SIPD  ali model follow..  142...........................................................................................................................................................................................................................LTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEENMKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG. 227
9 -5.1906g18_t mol:protein length:475 Protein LTV1 homolog  ali model follow..  356.TYSNLYNHPQLIKYQPKPKQIRISSKTGIPLNVLPKKGLTAKQTERIQMINGSDLPKVSTQPRSKNESKEDKRARK---------QAIKEERKERRVEKKANKLAFKLEKRRQEKELLNLKKNVEGLKL................................................................................................................................................................................ 475
10 -5.1504qkv_A mol:protein length:111 Polymerase I and transcript release factor  ali model follow..  8................................................................................NGVLVLSLLDKIIGQLTQAQLEERQAEMEGAVQSIQGELSKLGKATTSNTVSKLLEKVRKVSVNVKTVRGSLE......................................................................................................................................................... 87

FFAS is supported by the NIH grant R01-GM087218-01
1 3 1 9 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.