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Query: gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSALITHDRSTPVTGSLLPYVETPAPAPLQTQQVAGELKDKNGGVSSQGVQLPAPLAVVASQVTEGQQQEVTKLLESVTRGAAGSQLISNYVSVLTKFTLASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNMKKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGVGAVAGAMMVASGVIGMANMAVKQAAEDGLISQEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAIRTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSESHQQVMELIFQMINAKGDMLHNLAGRPHTVLast
1 -71.0003wxx_B mol:protein length:219 AopB  ali model follow..  47  1..............................................GQGVVLPQPMPGIGQQMSPPKQQELDQLRKTAQLGTANAAKLLGSSTLLNKLAFASPEEFEIELSKMTSELEQTQKKLKLADLERIRAENLKKIDENQTKMKEASEAADKAKKSGLASKIFGWISAIASMVIGAILIATGVGAAVGAMMIVGGAVGVANMAIQQAAADGRISPETMKVLGPIMIAAEILVAIVSIAVTFGASAASTAMK-AVKFATQAAD....................................................................................................................................... 219
2 -6.2805lzp_1 mol:protein length:180 Bacterial proteasome activator  ali model follow..  14  48...........................................................................................................MRIGTMIKQLLEEVRAAPLDEIRELEDGLAPELREELDRLTLPFNEDAVPSDAEL-AQLVGWLEGLFHGIQTALFAQQAARAQLQQM............................................................................................................................................................................................................... 151
3 -6.1205lva_A mol:protein length:174 NAD(P)H-FMN oxidoreductase  ali model follow..  11  5.................................................................................................VLAFHPNMEQSVVNRAFADTLKDAPGITLRDLYQEYPDEAIDVEKEQKLCEEHDRIVFQ----SSPPLLKKWLD---HVLLYGWAYGTNGTALRGKEFMVAVSAGAPEEAYQAGGSNHYAISELLRPFQATSNFIGTTYLPPYVFYQAGTAGKSELAEGATQYREHVLKSF..................................................................................................................................... 174
4 -5.9603zus_A mol:protein length:927 BOTULINUM NEUROTOXIN TYPE A, SYNAPTOSOMAL-ASSOCIATED PROTEIN 23  ali model follow..  586...................................................................................................FPNGKKYELDKYTMFHYLRA--QEFEHGKSRIALTNSVNEALLNPSRVYTSSDYVKKVNKATEAAMFLGWVEQLVYDFTDETSEVSTTDKIADITIIIPYIGPALNIGNMLYKDD----VGALIFSGAVILLEFIPEIAIPVLGTF--QTIDNALSKRNEKWDEVYKYIVTNTQIDLIRKKMKEALENQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSPYGVKRLEDFDASLKDALLKYIYDNRGTLIGQVDRLKDK.............. 889
5 -5.8505bqn_A mol:protein length:885 Botulinum neurotoxin type D,Botulinum neurotoxin type D  ali model follow..  14  537...................................................................................................IVFYDDITKYVDYLNSYYYLESQKLSNNVENTLTTSVEEALGYSNKIYTFLPSLAEKVNKGVQAGLFLNWANEVVEDFTTNIMKKDTLDKISDVSVIIPYIGPALN--IGNSALRGNFN-QAFATAGVAFLLFTIPALGVFTFYSSIQEREKIIKTIENCLEQRVKRLSRITTQFNHINYQMYDSLSYQADAIKAKIDLEYKKYSGSDKENIKSQVENLKNSLDVKISEAMNNINKFECSVTYLFKNMLPKVIDELNKFDLRTKTELINLIDSHNIILVGEVDRLKAKVN............ 843
6 -5.4801ddt_A mol:protein length:535 DIPHTHERIA TOXIN  ali model follow..  13  211.......................................................................................................DKTKTKIESLKEHGPIKNKMSESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTGANYAAWAVNVAQVIDSTTAALSILPGIGSVMGIADGAVNTEEIVAQSIALSSLMVAQAIPLVGELVDIGFAAYNFVESIINLFQVVHNSYNRPAYSPGHKTQPFLHDGYAVSWNTVEDSI-IRTGFQGESGHDIKITAENTPLPIAGVLLPTIPGKLDVNKSKTHISVNGRKIRMRCRAID-VHANLHVAFHRSSSEKIHSSDSIGVLGYQKTVD---TKVNSKLSLFFEIKS..... 535
7 -5.4805lfp_A mol:protein length:131 Bacterial proteasome activator  ali model follow..  14  6..................................................................................................LVEQPAKV-MRIGTMIKQLLEEVRAAPLDEIRELEDGLAPELREELDRLTLPFNEDAVPSDAEL-AQLVGWLEGLFHGIQTALFAQQAARAQLQQMRQGALPPG....................................................................................................................................................................................................... 125
8 -5.4603f2v_A mol:protein length:192 General stress protein 14  ali model follow..  12  6.................................................................................................IILAHPNISQSTVHKWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ----NCPPLLKQWLD---EVLTYGWAYGSKGKALKGRKIALAVSLGAPAADYRADGAVGCSVAEVLRPFELTAKYCNA....................................................................................................................................................................... 142
9 -5.3203w6s_A mol:protein length:243 MPR1 protein  ali model follow..  57...............................................................................................................................DTKYIPDSLINYLFKLFNLEIESGKTYPQLHSLTKQGFLNYWFHSFAVVVL-IQDNQDWNSVLLGTFYIKPNYAP-AGFLVNGAHRGQKVGYRLAQVYLNWAPLLGYKYSIFNLVFVTNQASWKIWDKLNFQRIGLVPHAG..................................................................................................................................... 208
10 -5.1304h89_A mol:protein length:173 GCN5-related N-acetyltransferase  ali model follow..  11  11................................................................................................................................VRDAEDADWPAILPFFREIVSAGETYAYDPELTDEQARSLWMTPSGAPQSRTTVAVDADGTVLGSANMYPNRPG-ASFMVAAAARGRGVGRALCQDMIDWAGREGFRAIQFNAVVETNTVAVKLWQSLGFRVIGTVPE....................................................................................................................................... 154

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.