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Query: gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92], from Y.pestis

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst MMQSMSRRGNCLDNSPMERVFRSLKSEWLLVGGYMDVHHAVRDIGEWIQSYYNTPPSAQWWITALLast
1 -6.1903phu_A mol:protein length:219 RNA-directed RNA polymerase L  ali model follow..  15  33.IVRQPGDGNC--------FYHSIAELTMPNKTDHSYHYIKRLTESAAR................ 72
2 -6.0303prm_A mol:protein length:178 L protein  ali model follow..  15  31.IVRQPGDGNC--------FYHSIAELTMPNKTDHSYHYIKRLTESAAR................ 70
3 -5.8905v5h_A mol:protein length:174 RNA-directed RNA polymerase L  ali model follow..  15  36.IVRQPGDGNC--------FYHSIAELTMPNKTDHSYHYIKRLTESAAR................ 75
4 -5.8605jze_A mol:protein length:159 RNA-dependent RNA polymerase  ali model follow..  15  31.VNKEVGDGNC--------FYRALSRLHSESRTSNEHLYYRLLIPDAVD................ 70
5 -5.8304bou_A mol:protein length:160 OTU DOMAIN-CONTAINING PROTEIN 3  ali model follow..  10  18.LREVPGDGNCLFRALGDQLEGHHRQETVQREDFEPFVEDDIPFEKHVA................ 76
6 -5.7604boq_A mol:protein length:183 UBIQUITIN THIOESTERASE OTU1  ali model follow..  14  19TRTVVPADNSCLFTSVYYVVEGGVLNP-------ACAPEMRRLIAQIVA................ 60
7 -5.6401kyo_F mol:protein length:74 UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN  ali model follow..  37  59.........HYLDTATAPRLFDKLK........................................ 74
8 -5.5705xte_E mol:protein length:75 Cytochrome b-c1 complex subunit 6, mitochondrial  ali model follow..  25  60.........HARDHCVAHKLFNNLK........................................ 75
9 -5.5303wxe_A mol:protein length:312 Uncharacterized protein  ali model follow..  11  13..KGIQGHYNSYLDSTLFCLFSFVLDTVLLRPRSKTDVEYYKETQELLRTEIVNPLRIHGYVC.. 76
10 -5.4703cwb_H mol:protein length:77 MITOCHONDRIAL UBIQUINOL-CYTOCHROME C REDUCTASE 11 KDA PROTEIN, COMPLEX III SUBUNIT VIII  ali model follow..  25  62.........HARDHCVAHKLFNKLK........................................ 77

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.