FFAS03 list of results B.fragilis / COG1018

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] 117 COG1018 58-111 -8.940 16 [R] COG4797 Predicted regulatory domain of a methyltransferase
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] 74 COG1018 34-71 -5.160 21 [S] COG4331 Predicted membrane protein
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] 447 COG1018 9-440 -82.900 18 [V] COG0534 Na+-driven multidrug efflux pump
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] 99 COG1018 1-99 -64.000 55 [J] COG0199 Ribosomal protein S14
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] 130 COG1018 7-130 -38.900 19 [F] COG1051 ADP-ribose pyrophosphatase
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] 110 COG1018 5-78 -8.930 9 [U] KOG4112 Signal peptidase subunit
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] 415 COG1018 2-415 -95.700 52 [O] COG1219 ATP-dependent protease Clp, ATPase subunit
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] 565 COG1018 2-564 -41.200 12 [T] KOG1130 Predicted G-alpha GTPase interaction protein, contains GoLoco domain
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] 157 COG1018 3-133 -8.590 7 [M] COG3056 Uncharacterized lipoprotein
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] 207 COG1018 153-206 -6.380 18 [S] COG0779 Uncharacterized protein conserved in bacteria
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] 311 COG1018 6-309 -44.700 18 [PT] COG3712 Fe2+-dicitrate sensor, membrane component
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] 142 COG1018 1-138 -75.100 34 [R] COG2166 SufE protein probably involved in Fe-S center assembly
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] 225 COG1018 2-225 -85.700 25 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] 388 COG1018 2-384 -89.700 20 [H] COG1488 Nicotinic acid phosphoribosyltransferase
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] 245 COG1018 2-244 -12.200 10 [M] COG3209 Rhs family protein
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] 599 COG1018 1-346 -74.800 26 [H] COG2073 Cobalamin biosynthesis protein CbiG
357-599 -69.600 45 [H] COG2875 Precorrin-4 methylase
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] 299 COG1018 89-299 -28.900 10 [R] COG0790 FOG: TPR repeat, SEL1 subfamily
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] 361 COG1018 50-355 -7.570 8 [KL] KOG2487 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] 71 COG1018 1-45 -5.080 13 [S] KOG4096 Uncharacterized conserved protein
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] 221 COG1018 14-204 -49.700 16 [R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|60680547\|ref\|YP_210691.1\| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343]`	`117`	`COG1018`	`58-111`	`-8.940`	`16`	`[R] COG4797 Predicted regulatory domain of a methyltransferase`
2	`gi\|60680256\|ref\|YP_210400.1\| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343]`	`74`	`COG1018`	`34-71`	`-5.160`	`21`	`[S] COG4331 Predicted membrane protein`
3	`gi\|60681449\|ref\|YP_211593.1\| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343]`	`447`	`COG1018`	`9-440`	`-82.900`	`18`	`[V] COG0534 Na+-driven multidrug efflux pump`
4	`gi\|60683425\|ref\|YP_213569.1\| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343]`	`99`	`COG1018`	`1-99`	`-64.000`	`55`	`[J] COG0199 Ribosomal protein S14`
5	`gi\|60682385\|ref\|YP_212529.1\| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343]`	`130`	`COG1018`	`7-130`	`-38.900`	`19`	`[F] COG1051 ADP-ribose pyrophosphatase`
6	`gi\|60680762\|ref\|YP_210906.1\| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343]`	`110`	`COG1018`	`5-78`	`-8.930`	`9`	`[U] KOG4112 Signal peptidase subunit`
7	`gi\|60683330\|ref\|YP_213474.1\| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343]`	`415`	`COG1018`	`2-415`	`-95.700`	`52`	`[O] COG1219 ATP-dependent protease Clp, ATPase subunit`
8	`gi\|60682477\|ref\|YP_212621.1\|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343]`	`565`	`COG1018`	`2-564`	`-41.200`	`12`	`[T] KOG1130 Predicted G-alpha GTPase interaction protein, contains GoLoco domain`
9	`gi\|60681243\|ref\|YP_211387.1\| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343]`	`157`	`COG1018`	`3-133`	`-8.590`	`7`	`[M] COG3056 Uncharacterized lipoprotein`
10	`gi\|60682315\|ref\|YP_212459.1\| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343]`	`207`	`COG1018`	`153-206`	`-6.380`	`18`	`[S] COG0779 Uncharacterized protein conserved in bacteria`
11	`gi\|60680924\|ref\|YP_211068.1\| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343]`	`311`	`COG1018`	`6-309`	`-44.700`	`18`	`[PT] COG3712 Fe2+-dicitrate sensor, membrane component`
12	`gi\|60683563\|ref\|YP_213707.1\| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343]`	`142`	`COG1018`	`1-138`	`-75.100`	`34`	`[R] COG2166 SufE protein probably involved in Fe-S center assembly`
13	`gi\|60682225\|ref\|YP_212369.1\| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343]`	`225`	`COG1018`	`2-225`	`-85.700`	`25`	`[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain`
14	`gi\|60682801\|ref\|YP_212945.1\| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343]`	`388`	`COG1018`	`2-384`	`-89.700`	`20`	`[H] COG1488 Nicotinic acid phosphoribosyltransferase`
15	`gi\|60680875\|ref\|YP_211019.1\| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343]`	`245`	`COG1018`	`2-244`	`-12.200`	`10`	`[M] COG3209 Rhs family protein`
16	`gi\|60682029\|ref\|YP_212173.1\| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343]`	`599`	`COG1018`	`1-346`	`-74.800`	`26`	`[H] COG2073 Cobalamin biosynthesis protein CbiG`
				`357-599`	`-69.600`	`45`	`[H] COG2875 Precorrin-4 methylase`
17	`gi\|60681247\|ref\|YP_211391.1\| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343]`	`299`	`COG1018`	`89-299`	`-28.900`	`10`	`[R] COG0790 FOG: TPR repeat, SEL1 subfamily`
18	`gi\|60681605\|ref\|YP_211749.1\| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343]`	`361`	`COG1018`	`50-355`	`-7.570`	`8`	`[KL] KOG2487 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4`
19	`gi\|60681337\|ref\|YP_211481.1\| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343]`	`71`	`COG1018`	`1-45`	`-5.080`	`13`	`[S] KOG4096 Uncharacterized conserved protein`
20	`gi\|60680681\|ref\|YP_210825.1\| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343]`	`221`	`COG1018`	`14-204`	`-49.700`	`16`	`[R] KOG1665 AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats`