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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] 117 CSGID 26-117 -35.600 14  IDP06550 set218a-004 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] 74 CSGID 47-74 -6.610 32  IDP05388 hypothetical protein BA_2383 [Bacillus anthracis str. Ames] BA_2383 [Bacillus anthracis str. Ames]
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] 447 CSGID 1-442 -95.300 20  IDP05138 putative drug/sodium antiporter [Clostridium difficile 630] CD2874 [Peptoclostridium difficile 630]
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] 99 CSGID 41-99 -43.300 39  IDP04080 30S ribosomal protein S14 [Bacillus anthracis str. Sterne] BAS0123 [Bacillus anthracis str. Sterne]
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] 130 CSGID 1-129 -77.700 29  IDP02584 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase [Salmonella typhimurium LT2] STM1301 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] 110 CSGID 8-77 -6.060 20  IDP02016 hypothetical protein YPO0252 [Yersinia pestis CO92] YPO0252 [Yersinia pestis CO92]
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] 415 CSGID 6-415 -104.000 51  IDP02333 gene: clpX; ATP-dependent protease ATP-binding subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0625 [Francisella tularensis subsp. tularensis SCHU S4]
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] 565 CSGID 4-343 -32.800 IDP04095 hypothetical protein [Yersinia pestis CO92] YPO1987 [Yersinia pestis CO92]
4-564 -24.000 10  IDP02495 gene: pflA; paralyzed flagella protein PflA [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1565c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] 157 CSGID 1-117 -7.550 IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99]
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] 207 CSGID 146-206 -6.380 18  IDP91376 hypothetical protein VV1_1694 [Vibrio vulnificus CMCP6] VV1_1694 [Vibrio vulnificus CMCP6]
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] 311 CSGID 116-282 -6.240 13  IDP95268 hypothetical protein A1S_0043 [Acinetobacter baumannii ATCC 17978] YP_001083140 [Acinetobacter baumannii ATCC 17978]
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] 142 CSGID 1-136 -74.300 30  IDP00875 gene: ynhA; cysteine desufuration protein SufE STM1374 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] 225 CSGID 1-225 -94.900 28  IDP95294 response regulator protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] YP_494943 [Staphylococcus aureus subsp. aureus USA300_FPR3757]
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] 388 CSGID 2-388 -96.800 33  IDP90895 gene: pncB; nicotinate phosphoribosyltransferase [Yersinia pestis CO92] YPO1413 [Yersinia pestis CO92]
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] 245 CSGID 2-244 -20.000 12  IDP05456 putative wall-associated protein [Bacillus anthracis str. Ames] BA_1094 [Bacillus anthracis str. Ames]
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] 599 CSGID 1-346 -72.900 28  IDP93847 cobalamin biosynthesis protein CbiG [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006909 [Yersinia enterocolitica subsp. enterocolitica 8081]
352-598 -65.700 44  IDP05539 gene: cbiF; precorrin-4 C(11)-methyltransferase [Clostridium difficile 630] CD3426 [Peptoclostridium difficile 630]
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] 299 CSGID 120-299 -36.200 13  IDP90083 hypothetical protein CGSHiII_00664 [Haemophilus influenzae PittII] ZP_01795671 [Haemophilus influenzae PittII]
171-299 -36.900 17  IDP06196 hypothetical protein HP0336 [Helicobacter pylori 26695] NP_207134 [Helicobacter pylori 26695]
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] 361 CSGID 155-354 -6.830 12  IDP06453 gene: F4L; F4L [Monkeypox virus Zaire-96-I-16] NP_536480 [Monkeypox virus Zaire-96-I-16]
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] 71 CSGID 3-53 -5.650 IDP05644 gene: bclA2; exosporium glycoprotein [Clostridium difficile 630] CD3230 [Peptoclostridium difficile 630]
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] 221 CSGID 3-207 -51.400 11  IDP01014 gene: pipB2; secreted effector protein STM2780 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 2 4 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.