FFAS03 list of results B.fragilis / PfamA32U

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] 117 PfamA32U 50-111 -25.200 18 PF05402.12; I3UDV1_ADVKW/25-86; Coenzyme PQQ synthesis protein D (PqqD)
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] 74 PfamA32U 37-74 -7.010 18 PF16979.5; E2AFW7_CAMFO/312-435; SAPK-interacting protein 1 (Sin1), Pleckstrin-homology
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] 447 PfamA32U 14-345 -18.200 9 PF07260.11; F1Q528_DANRE/1-344; Progressive ankylosis protein (ANKH)
44-447 -26.400 11 PF03023.14; MURJ_ECOLI/28-479; Lipid II flippase MurJ
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] 99 PfamA32U 45-98 -38.200 57 PF00253.21; RR14_PHATC/46-99; Ribosomal protein S14p/S29e
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] 130 PfamA32U 7-126 -39.000 11 PF14815.6; R5EBJ1_9FIRM/149-257; NUDIX domain
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] 110 PfamA32U 6-96 -74.700 57 PF13571.6; I4A2I7_ORNRL/10-100; Domain of unknown function (DUF4133 topsan)
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] 415 PfamA32U 67-249 -20.200 23 PF05496.12; RUVB_BACAN/21-179; Holliday junction DNA helicase RuvB P-loop domain
111-309 -32.300 15 PF07724.14; Q7PAG5_RICSI/595-759; AAA domain (Cdc48 subfamily)
315-384 -18.100 16 PF10431.9; Q118T1_TRIEI/770-850; C-terminal, D2-small domain, of ClpB protein
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] 565 PfamA32U 11-330 -30.700 8 PF17874.1; W4QMK5_9BACI/433-753; MalT-like TPR region
86-323 -39.800 11 PF17139.4; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)
157-497 -25.100 9 PF17826.1; G1SXV9_RABIT/101-469; Family of unknown function (DUF5588 topsan)
507-557 -9.760 13 PF00196.19; NARP_HAEIN/147-203; Bacterial regulatory proteins, luxR family
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] 157 PfamA32U 10-156 -48.300 10 PF14137.6; A6LYB2_CLOB8/32-184; Domain of unknown function (DUF4304 topsan)
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] 207 PfamA32U 89-177 -6.400 14 PF17039.5; B3MYJ1_DROAN/115-236; Fucosyltransferase, N-terminal
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] 311 PfamA32U 100-196 -30.100 21 PF04773.13; Q2YA72_NITMU/40-132; FecR protein
240-308 -21.400 20 PF16344.5; A6LGL7_PARD8/234-304; Domain of unknown function (DUF4974 topsan)
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] 142 PfamA32U 11-131 -66.700 40 PF02657.15; J7QRG4_METSZ/8-134; Fe-S metabolism associated domain
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] 225 PfamA32U 2-222 -43.400 15 PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
3-112 -51.900 30 PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] 388 PfamA32U 7-127 -51.200 22 PF17767.1; A0A075R4Y2_BRELA/59-193; Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain
160-385 -77.100 40 PF04095.16; PNCB_NEIMB/171-398; Nicotinate phosphoribosyltransferase (NAPRTase) family
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] 245 PfamA32U 4-245 -19.900 10 PF06661.11; Q2K2F2_RHIEC/43-358; VirE3
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] 599 PfamA32U 45-126 -47.200 50 PF11760.8; R6GY19_9FIRM/35-116; Cobalamin synthesis G N-terminal
132-213 -11.200 46 PF11761.8; R7JAV4_9BACT/120-216; Cobalamin biosynthesis central region
227-389 -43.200 25 PF01890.16; K9VGP0_9CYAN/96-268; Cobalamin synthesis G C-terminus
353-558 -52.300 26 PF00590.20; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] 299 PfamA32U 215-299 -11.300 10 PF17139.4; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)
242-277 -22.300 16 PF08238.12; Q74B15_GEOSL/119-154; Sel1 repeat
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] 361 PfamA32U 246-358 -7.670 18 PF15616.6; Q5NWS3_AROAE/221-349; TerY-C metal binding domain
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] 71 PfamA32U 4-55 -7.530 13 PF16845.5; B9HCU3_POPTR/31-111; Aspartic acid proteinase inhibitor
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] 221 PfamA32U 38-210 -11.900 8 PF12541.8; R6DEH5_9CLOT/2-276; Protein of unknown function (DUF3737 topsan)
101-181 -33.500 59 PF13599.6; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|60680547\|ref\|YP_210691.1\| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343]`	`117`	`PfamA32U`	`50-111`	`-25.200`	`18`	`PF05402.12; I3UDV1_ADVKW/25-86; Coenzyme PQQ synthesis protein D (PqqD)`
2	`gi\|60680256\|ref\|YP_210400.1\| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343]`	`74`	`PfamA32U`	`37-74`	`-7.010`	`18`	`PF16979.5; E2AFW7_CAMFO/312-435; SAPK-interacting protein 1 (Sin1), Pleckstrin-homology`
3	`gi\|60681449\|ref\|YP_211593.1\| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343]`	`447`	`PfamA32U`	`14-345`	`-18.200`	`9`	`PF07260.11; F1Q528_DANRE/1-344; Progressive ankylosis protein (ANKH)`
				`44-447`	`-26.400`	`11`	`PF03023.14; MURJ_ECOLI/28-479; Lipid II flippase MurJ`
4	`gi\|60683425\|ref\|YP_213569.1\| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343]`	`99`	`PfamA32U`	`45-98`	`-38.200`	`57`	`PF00253.21; RR14_PHATC/46-99; Ribosomal protein S14p/S29e`
5	`gi\|60682385\|ref\|YP_212529.1\| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343]`	`130`	`PfamA32U`	`7-126`	`-39.000`	`11`	`PF14815.6; R5EBJ1_9FIRM/149-257; NUDIX domain`
6	`gi\|60680762\|ref\|YP_210906.1\| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343]`	`110`	`PfamA32U`	`6-96`	`-74.700`	`57`	`PF13571.6; I4A2I7_ORNRL/10-100; Domain of unknown function (DUF4133 topsan)`
7	`gi\|60683330\|ref\|YP_213474.1\| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343]`	`415`	`PfamA32U`	`67-249`	`-20.200`	`23`	`PF05496.12; RUVB_BACAN/21-179; Holliday junction DNA helicase RuvB P-loop domain`
				`111-309`	`-32.300`	`15`	`PF07724.14; Q7PAG5_RICSI/595-759; AAA domain (Cdc48 subfamily)`
				`315-384`	`-18.100`	`16`	`PF10431.9; Q118T1_TRIEI/770-850; C-terminal, D2-small domain, of ClpB protein`
8	`gi\|60682477\|ref\|YP_212621.1\|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343]`	`565`	`PfamA32U`	`11-330`	`-30.700`	`8`	`PF17874.1; W4QMK5_9BACI/433-753; MalT-like TPR region`
				`86-323`	`-39.800`	`11`	`PF17139.4; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)`
				`157-497`	`-25.100`	`9`	`PF17826.1; G1SXV9_RABIT/101-469; Family of unknown function (DUF5588 topsan)`
				`507-557`	`-9.760`	`13`	`PF00196.19; NARP_HAEIN/147-203; Bacterial regulatory proteins, luxR family`
9	`gi\|60681243\|ref\|YP_211387.1\| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343]`	`157`	`PfamA32U`	`10-156`	`-48.300`	`10`	`PF14137.6; A6LYB2_CLOB8/32-184; Domain of unknown function (DUF4304 topsan)`
10	`gi\|60682315\|ref\|YP_212459.1\| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343]`	`207`	`PfamA32U`	`89-177`	`-6.400`	`14`	`PF17039.5; B3MYJ1_DROAN/115-236; Fucosyltransferase, N-terminal`
11	`gi\|60680924\|ref\|YP_211068.1\| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343]`	`311`	`PfamA32U`	`100-196`	`-30.100`	`21`	`PF04773.13; Q2YA72_NITMU/40-132; FecR protein`
				`240-308`	`-21.400`	`20`	`PF16344.5; A6LGL7_PARD8/234-304; Domain of unknown function (DUF4974 topsan)`
12	`gi\|60683563\|ref\|YP_213707.1\| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343]`	`142`	`PfamA32U`	`11-131`	`-66.700`	`40`	`PF02657.15; J7QRG4_METSZ/8-134; Fe-S metabolism associated domain`
13	`gi\|60682225\|ref\|YP_212369.1\| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343]`	`225`	`PfamA32U`	`2-222`	`-43.400`	`15`	`PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase`
				`3-112`	`-51.900`	`30`	`PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain`
14	`gi\|60682801\|ref\|YP_212945.1\| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343]`	`388`	`PfamA32U`	`7-127`	`-51.200`	`22`	`PF17767.1; A0A075R4Y2_BRELA/59-193; Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain`
				`160-385`	`-77.100`	`40`	`PF04095.16; PNCB_NEIMB/171-398; Nicotinate phosphoribosyltransferase (NAPRTase) family`
15	`gi\|60680875\|ref\|YP_211019.1\| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343]`	`245`	`PfamA32U`	`4-245`	`-19.900`	`10`	`PF06661.11; Q2K2F2_RHIEC/43-358; VirE3`
16	`gi\|60682029\|ref\|YP_212173.1\| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343]`	`599`	`PfamA32U`	`45-126`	`-47.200`	`50`	`PF11760.8; R6GY19_9FIRM/35-116; Cobalamin synthesis G N-terminal`
				`132-213`	`-11.200`	`46`	`PF11761.8; R7JAV4_9BACT/120-216; Cobalamin biosynthesis central region`
				`227-389`	`-43.200`	`25`	`PF01890.16; K9VGP0_9CYAN/96-268; Cobalamin synthesis G C-terminus`
				`353-558`	`-52.300`	`26`	`PF00590.20; Q3A6A0_PELCD/39-272; Tetrapyrrole (Corrin/Porphyrin) Methylases`
17	`gi\|60681247\|ref\|YP_211391.1\| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343]`	`299`	`PfamA32U`	`215-299`	`-11.300`	`10`	`PF17139.4; R7EHD4_9BACE/12-276; Domain of unknown function (DUF5112 topsan)`
				`242-277`	`-22.300`	`16`	`PF08238.12; Q74B15_GEOSL/119-154; Sel1 repeat`
18	`gi\|60681605\|ref\|YP_211749.1\| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343]`	`361`	`PfamA32U`	`246-358`	`-7.670`	`18`	`PF15616.6; Q5NWS3_AROAE/221-349; TerY-C metal binding domain`
19	`gi\|60681337\|ref\|YP_211481.1\| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343]`	`71`	`PfamA32U`	`4-55`	`-7.530`	`13`	`PF16845.5; B9HCU3_POPTR/31-111; Aspartic acid proteinase inhibitor`
20	`gi\|60680681\|ref\|YP_210825.1\| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343]`	`221`	`PfamA32U`	`38-210`	`-11.900`	`8`	`PF12541.8; R6DEH5_9CLOT/2-276; Protein of unknown function (DUF3737 topsan)`
				`101-181`	`-33.500`	`59`	`PF13599.6; D6D2K3_9BACE/86-166; Pentapeptide repeats (9 copies)`