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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4678next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|60680547|ref|YP_210691.1| hypothetical protein (BF1003) [Bacteroides fragilis NCTC 9343] 117 SCOP207 62-116 -7.870 18  d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
2 gi|60680256|ref|YP_210400.1| hypothetical protein (BF0697) [Bacteroides fragilis NCTC 9343] 74 SCOP207 30-65 -5.970 30  d1pp9e2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
3 gi|60681449|ref|YP_211593.1| MatE family transmembrane protein (BF1960) [Bacteroides fragilis NCTC 9343] 447 SCOP207 2-444 -94.800 21  d5c6na_ f.61.1.1 (A:) DinF {Bacillus halodurans [TaxId: 272558]}
4 gi|60683425|ref|YP_213569.1| 30S ribosomal protein S14 (BF3990) [Bacteroides fragilis NCTC 9343] 99 SCOP207 2-99 -62.200 55  d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli [TaxId: 562]}
5 gi|60682385|ref|YP_212529.1| putative CTP pyrophosphohydrolase (BF2916) [Bacteroides fragilis NCTC 9343] 130 SCOP207 2-129 -83.600 100  d3gwya1 d.113.1.0 (A:2-129) automated matches {Bacteroides fragilis [TaxId: 272559]}
6 gi|60680762|ref|YP_210906.1| putative transmembrane conjugate transposon protein (BF1242) [Bacteroides fragilis NCTC 9343] 110 SCOP207 1-51 -7.000 13  d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
7 gi|60683330|ref|YP_213474.1| ATP-dependent protease ATP-binding subunit ClpX (BF3893) [Bacteroides fragilis NCTC 9343] 415 SCOP207 6-48 -10.300 41  d2ds5a_ g.39.1.11 (A:) automated matches {Escherichia coli [TaxId: 562]}
63-410 -97.400 52  d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
8 gi|60682477|ref|YP_212621.1|(removed signalp:1-23) hypothetical protein (BF3007) [Bacteroides fragilis NCTC 9343] 565 SCOP207 4-342 -27.700 12  d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase, OGT {Human (Homo sapiens) [TaxId: 9606]}
37-313 -38.600 10  d3txna1 a.118.8.9 (A:38-322) Proteasome regulatory subunit Rpn6, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
77-382 -30.500 9  d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
100-565 -10.100 7  d4jspa3 a.24.7.1 (A:1385-2001) mTOR FKBP12rapamycin-binding (FRB) domain {Human (Homo sapiens) [TaxId: 9606]}
506-564 -15.300 13  d1p4wa_ a.4.6.2 (A:) Transcriptional regulator RcsB {Erwinia amylovora [TaxId: 552]}
9 gi|60681243|ref|YP_211387.1| hypothetical protein (BF1751) [Bacteroides fragilis NCTC 9343] 157 SCOP207 7-132 -7.330 9  d1usub_ d.83.2.1 (B:) Activator of Hsp90 ATPase, Aha1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
10 gi|60682315|ref|YP_212459.1| hypothetical protein (BF2845) [Bacteroides fragilis NCTC 9343] 207 SCOP207 1-114 -6.850 12  d3l60a_ c.43.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}
11 gi|60680924|ref|YP_211068.1| putative anti-sigma factor (BF1413) [Bacteroides fragilis NCTC 9343] 311 SCOP207 107-290 -6.860 13  d2vu9a1 b.29.1.6 (A:875-1079) automated matches {Clostridium botulinum [TaxId: 36826]}
12 gi|60683563|ref|YP_213707.1| putative SufE Fe/S-cluster-related protein (BF4142) [Bacteroides fragilis NCTC 9343] 142 SCOP207 1-136 -74.300 30  d3g0ma_ d.224.1.1 (A:) automated matches {Salmonella typhimurium [TaxId: 99287]}
13 gi|60682225|ref|YP_212369.1| putative two component system response regulator (BF2753) [Bacteroides fragilis NCTC 9343] 225 SCOP207 1-121 -62.500 38  d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
2-164 -55.800 17  d3rqia_ c.23.1.0 (A:) automated matches {Burkholderia pseudomallei [TaxId: 320372]}
118-225 -45.700 21  d1ys6a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
14 gi|60682801|ref|YP_212945.1| nicotinate phosphoribosyltransferase (BF3334) [Bacteroides fragilis NCTC 9343] 388 SCOP207 2-136 -65.500 44  d2im5a1 d.41.2.2 (A:3-137) Nicotinate phosphoribosyltransferase, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
137-387 -89.800 49  d2im5a2 c.1.17.2 (A:138-391) Nicotinate phosphoribosyltransferase, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
15 gi|60680875|ref|YP_211019.1| hypothetical protein (BF1359) [Bacteroides fragilis NCTC 9343] 245 SCOP207 1-244 -8.690 13  d3bwta_ a.118.1.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
16 gi|60682029|ref|YP_212173.1| putative bifunctional CbiF/CbiG cobalamin biosynthesis protein (BF2549) [Bacteroides fragilis NCTC 9343] 599 SCOP207 1-170 -57.400 23  d3eeqa2 c.152.1.1 (A:10-214) Cobalamin biosynthesis protein G, CbiG {Sulfolobus solfataricus [TaxId: 2287]}
219-346 -32.100 25  d2w6ka1 c.151.1.1 (A:1-139) Cobalamin biosynthesis protein CobE {Pseudomonas aeruginosa [TaxId: 287]}
353-580 -67.300 44  d1cbfa1 c.90.1.1 (A:21-251) Cobalt precorrin-4 methyltransferase CbiF {Bacillus megaterium [TaxId: 1404]}
17 gi|60681247|ref|YP_211391.1| hypothetical protein (BF1755) [Bacteroides fragilis NCTC 9343] 299 SCOP207 115-299 -33.000 14  d1ouva1 a.118.18.1 (A:28-290) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}
171-299 -38.100 17  d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}
18 gi|60681605|ref|YP_211749.1| hypothetical protein (BF2124) [Bacteroides fragilis NCTC 9343] 361 SCOP207 310-354 -8.060 13  d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
19 gi|60681337|ref|YP_211481.1| hypothetical protein (BF1846) [Bacteroides fragilis NCTC 9343] 71 SCOP207 4-67 -6.080 10  d3l0ra1 d.17.1.0 (A:3-109) automated matches {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
20 gi|60680681|ref|YP_210825.1| hypothetical protein (BF1156) [Bacteroides fragilis NCTC 9343] 221 SCOP207 3-215 -12.200 12  d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
40-219 -63.100 21  d2bm5a_ b.80.8.1 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 83332]}

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.