current user: public
If you have questions about the server, please let us know.

Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:
Page size:   Sort by score   Show only entries containing string:
Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 COG1018 7-95 -6.480 14  [J] COG0198 Ribosomal protein L24
CSGID 1-68 -7.050 17  IDP05443 hypothetical protein lmo0463 [Listeria monocytogenes EGD-e] lmo0463 [Listeria monocytogenes EGD-e]
H.sapiens 2-129 -11.000 13  sp|Q9BZQ2|CA014_HUMAN Uncharacterized protein C1orf14 OS=Homo sapiens GN=C1orf14 PE=1 SV=2
HGM_OVER 1-106 -4.270 8  HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;
NEW_HUMAN_DOMAINS 9-103 -6.180 7  sp|Q8NG31|CASC5_HUMAN Protein CASC5 OS=Homo sapiens GN=CASC5 PE=1 SV=3
PDB1018 7-95 -7.070 11  1nkw_S mol:protein length:115 50S ribosomal protein L24
PfamA32U 184-205 -6.510 22  PF06093.13; SPT4_CANAL/6-85; Spt4/RpoE2 zinc finger
SCOP207 8-205 -5.830 9  d3pmea2 b.42.4.0 (A:1086-1280) automated matches {Clostridium botulinum [TaxId: 1491]}
VFDB 7-95 -6.480 14  [J] COG0198 Ribosomal protein L24
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 COG1018 95-193 -4.980 8  [J] COG1588 RNase P/RNase MRP subunit p29
CSGID 1-125 -5.760 8  IDP05554 hypothetical protein CD3669 [Clostridium difficile 630] CD3669 [Peptoclostridium difficile 630]
H.sapiens 1-265 -9.050 10  sp|Q14315|FLNC_HUMAN Filamin-C OS=Homo sapiens GN=FLNC PE=1 SV=3
HGM_OVER 1-169 -4.530 8  PB012823 Q5LCS8_BACFN/1-272 PB012823; Pfam-B_12823;
NEW_HUMAN_DOMAINS 1-211 -5.870 10  sp|Q8NCR0|B3GL2_HUMAN UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 OS=Homo sapiens GN=B3GALNT2 PE=1 SV=1
PDB1018 2-264 -7.920 8  4dkd_C mol:protein length:292 Macrophage colony-stimulating factor 1 receptor
PfamA32U 103-205 -8.660 12  PF14344.6; A9AZA1_HERA2/30-148; Domain of unknown function (DUF4397 topsan)
SCOP207 43-165 -6.530 8  d3llpa2 b.42.5.1 (A:141-259) Fascin {Human (Homo sapiens) [TaxId: 9606]}
VFDB 95-193 -4.980 8  [J] COG1588 RNase P/RNase MRP subunit p29
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 COG1018 31-117 -15.100 12  [L] COG0776 Bacterial nucleoid DNA-binding protein
CSGID 6-222 -9.780 9  IDP05036 hypothetical protein BA_1663 [Bacillus anthracis str. Ames] BA_1663 [Bacillus anthracis str. Ames]
32-119 -13.800 14  IDP06125 DNA-binding protein HU [Helicobacter pylori J99] NP_223492 [Helicobacter pylori J99]
H.sapiens 49-215 -6.920 7  sp|Q5JPE7|NOMO2_HUMAN(removed signalp:1-31) Nodal modulator 2 OS=Homo sapiens GN=NOMO2 PE=1 SV=1
HGM_OVER 49-213 -4.550 9  PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;
NEW_HUMAN_DOMAINS 143-216 -6.370 21  sp|O00562|PITM1_HUMAN Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNM1 PE=1 SV=4
PDB1018 2-258 -96.300 54  4fmr_A mol:protein length:265 uncharacterized hypothetical protein
PfamA32U 4-124 -48.500 39  PF14848.6; J9QY98_RIEAN/3-123; DNA-binding domain
132-231 -36.300 39  PF14734.6; B3QWM9_CHLT3/130-225; Domain of unknown function (DUF4469 topsan) with IG-like fold
SCOP207 32-117 -14.800 16  d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
VFDB 31-117 -15.100 12  [L] COG0776 Bacterial nucleoid DNA-binding protein
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 COG1018 16-162 -6.450 14  [T] KOG3294 WW domain binding protein WBP-2, contains GRAM domain
CSGID 24-155 -6.100 15  IDP06398 gene: ORF52; ORF52 [Human herpesvirus 8] YP_001129405 [Human herpesvirus 8]
H.sapiens 5-211 -7.420 22  sp|Q9H3R1|NDST4_HUMAN(removed signalp:1-29) Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 OS=Homo sapiens GN=NDST4 PE=2 SV=1
HGM_OVER 1-170 -4.010 9  PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;
NEW_HUMAN_DOMAINS 66-193 -6.110 12  sp|Q03989|ARI5A_HUMAN AT-rich interactive domain-containing protein 5A OS=Homo sapiens GN=ARID5A PE=2 SV=2
PDB1018 64-209 -7.100 21  1zw9_A mol:protein length:240 HSP82
PfamA32U 26-159 -6.980 13  PF08664.10; Q81S68_BACAN/159-299; YcbB domain
SCOP207 69-209 -6.740 22  d3t0ha_ d.122.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 16-162 -6.450 14  [T] KOG3294 WW domain binding protein WBP-2, contains GRAM domain
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 COG1018 1-177 -65.100 18  [J] KOG1728 40S ribosomal protein S11
CSGID 1-56 -6.930 13  IDP91669 AGSK1_HUMAN [Homo sapiens]
H.sapiens 6-177 -63.500 20  sp|P62280|RS11_HUMAN 40S ribosomal protein S11 OS=Homo sapiens GN=RPS11 PE=1 SV=3
HGM_OVER 1-23 -5.030 26  PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;
NEW_HUMAN_DOMAINS 2-42 -9.280 24  sp|Q92828|COR2A_HUMAN Coronin-2A OS=Homo sapiens GN=CORO2A PE=2 SV=2
PDB1018 1-177 -63.900 20  5oql_v mol:protein length:161 40S ribosomal protein S11-like protein
85-177 -65.900 43  5o5j_Q mol:protein length:98 30S ribosomal protein S17
PfamA32U 46-106 -14.000 13  PF16205.5; T1FFX1_HELRO/5-69; Ribosomal_S17 N-terminal
108-175 -58.800 47  PF00366.20; M9X2Z9_MANHA/10-77; Ribosomal protein S17
SCOP207 102-177 -56.300 48  d1fjgq_ b.40.4.5 (Q:) Ribosomal protein S17 {Thermus thermophilus [TaxId: 274]}
VFDB 1-177 -65.100 18  [J] KOG1728 40S ribosomal protein S11
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 COG1018 5-140 -7.470 19  [G] COG3732 Phosphotransferase system sorbitol-specific component IIBC
CSGID 1-143 -7.390 7  IDP05460 putative lipoprotein [Bacillus anthracis str. Ames] BA_0985 [Bacillus anthracis str. Ames]
H.sapiens 9-106 -8.770 15  sp|A6NEH6|YB028_HUMAN Transmembrane protein ENSP00000343375 OS=Homo sapiens PE=4 SV=2
HGM_OVER 1-49 -10.000 18  HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;
NEW_HUMAN_DOMAINS 24-107 -6.560 19  sp|Q9H2S6|TNMD_HUMAN Tenomodulin OS=Homo sapiens GN=TNMD PE=2 SV=1
PDB1018 9-73 -8.590 21  1wwx_A mol:protein length:107 E74-like factor 5 ESE-2b
PfamA32U 1-106 -8.200 16  PF15444.6; M3W3J1_FELCA/1-212; Transmembrane protein 247
SCOP207 9-88 -7.020 16  d3jtga_ a.4.5.21 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
VFDB 5-140 -7.470 19  [G] COG3732 Phosphotransferase system sorbitol-specific component IIBC
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 COG1018 28-123 -8.230 15  [S] KOG2889 Predicted PRP38-like splicing factor
CSGID 23-119 -6.430 10  IDP92084 DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii ME49] TGME49_112250 [Toxoplasma gondii ME49]
H.sapiens 62-119 -9.650 25  sp|Q8TCY5|MRAP_HUMAN Melanocortin-2 receptor accessory protein OS=Homo sapiens GN=MRAP PE=1 SV=2
HGM_OVER 49-117 -5.380 15  PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;
NEW_HUMAN_DOMAINS 45-119 -6.450 10  tr|E9PN64|E9PN64_HUMAN Uncharacterized protein OS=Homo sapiens GN=ST3GAL4 PE=4 SV=1
PDB1018 28-118 -8.220 12  5o9z_I mol:protein length:312 Pre-mRNA-splicing factor 38A
PfamA32U 3-127 -8.430 14  PF17093.5; Q9A3C7_CAUVC/1-138; Penicillin-binding protein N-terminus
SCOP207 19-82 -7.080 12  d4kbqa_ a.118.8.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 28-123 -8.230 15  [S] KOG2889 Predicted PRP38-like splicing factor
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 COG1018 4-177 -26.500 10  [R] KOG4144 Arylalkylamine N-acetyltransferase
CSGID 1-181 -24.700 14  IDP92633 gene: yafP; predicted acyltransferase with acyl-CoA N-acyltransferase domain [Escherichia coli str. K-12 substr. MG1655] b0234 [Escherichia coli str. K-12 substr. MG1655]
H.sapiens 1-179 -27.100 10  sp|Q16613|SNAT_HUMAN Serotonin N-acetyltransferase OS=Homo sapiens GN=AANAT PE=1 SV=1
HGM_OVER 14-125 -2.960 13  PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]
NEW_HUMAN_DOMAINS 102-153 -6.300 19  tr|B4DHE5|B4DHE5_HUMAN Uncharacterized protein OS=Homo sapiens GN=NCAPG2 PE=2 SV=1
PDB1018 6-180 -70.400 18  6g96_B mol:protein length:176 Acetyltransferase
PfamA32U 24-181 -26.400 16  PF13673.7; R6CQE4_9CLOT/34-160; Acetyltransferase (GNAT) domain
SCOP207 1-177 -28.800 12  d1cjwa_ d.108.1.1 (A:) Serotonin N-acetyltranferase {Sheep (Ovis aries) [TaxId: 9940]}
VFDB 4-177 -26.500 10  [R] KOG4144 Arylalkylamine N-acetyltransferase
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 COG1018 1-343 -98.300 29  [P] COG0226 ABC-type phosphate transport system, periplasmic component
CSGID 1-332 -64.700 13  IDP91442 ABC-type phosphate transport system, periplasmic component [Vibrio vulnificus CMCP6] VV1_0466 [Vibrio vulnificus CMCP6]
H.sapiens 82-318 -5.360 10  sp|Q8TE56|ATS17_HUMAN(removed signalp:1-27) A disintegrin and metalloproteinase with thrombospondin motifs 17 OS=Homo sapiens GN=ADAMTS17 PE=2 SV=2
HGM_OVER 2-138 -6.580 5  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
NEW_HUMAN_DOMAINS 66-161 -6.310 17  sp|O75923|DYSF_HUMAN Dysferlin OS=Homo sapiens GN=DYSF PE=1 SV=1
PDB1018 9-335 -107.000 30  5i84_A mol:protein length:335 Phosphate-binding protein PstS
PfamA32U 16-305 -64.500 15  PF12849.7; B6YQR6_AZOPC/32-299; PBP superfamily domain
SCOP207 16-336 -102.000 24  d1pc3a_ c.94.1.1 (A:) Phosphate-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}
VFDB 1-343 -98.300 29  [P] COG0226 ABC-type phosphate transport system, periplasmic component
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 COG1018 274-357 -9.080 23  [K] KOG4797 Transcriptional regulator
CSGID 237-356 -7.260 13  IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]
H.sapiens 255-356 -9.600 26  sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subunit 4 OS=Homo sapiens GN=SNAPC4 PE=1 SV=1
HGM_OVER 209-356 -3.870 10  PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;
NEW_HUMAN_DOMAINS 237-352 -6.480 20  sp|Q8N2C7|UNC80_HUMAN Protein unc-80 homolog OS=Homo sapiens GN=UNC80 PE=2 SV=2
PDB1018 245-357 -8.070 26  5m41_A mol:protein length:757 Nigritoxine
PfamA32U 246-356 -7.870 12  PF12126.8; I3MLB7_ICTTR/239-567; Protein of unknown function (DUF3583 topsan)
SCOP207 250-356 -6.590 16  d3o7ba_ c.116.1.0 (A:) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}
VFDB 274-357 -9.080 23  [K] KOG4797 Transcriptional regulator
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 COG1018 132-271 -8.790 12  [R] KOG4264 Nucleo-cytoplasmic protein MLN51
CSGID 204-257 -8.100 29  CPX_91754_91753 Complex of TVB1_HUMAN with TSST_STAAU [Undefined organism]
H.sapiens 175-271 -9.640 16  sp|Q15047|SETB1_HUMAN Histone-lysine N-methyltransferase SETDB1 OS=Homo sapiens GN=SETDB1 PE=1 SV=1
HGM_OVER 131-275 -4.170 13  PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
NEW_HUMAN_DOMAINS 202-278 -6.790 22  sp|Q86WV6|TM173_HUMAN Transmembrane protein 173 OS=Homo sapiens GN=TMEM173 PE=1 SV=1
PDB1018 196-278 -8.820 26  1mv3_A mol:protein length:213 Myc box dependent interacting protein 1
PfamA32U 206-278 -8.810 24  PF15759.5; G5BQB5_HETGA/102-601; TMEM108 family
SCOP207 191-282 -6.980 21  d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
VFDB 132-271 -8.790 12  [R] KOG4264 Nucleo-cytoplasmic protein MLN51
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 COG1018 30-276 -9.420 13  [M] COG5434 Endopolygalacturonase
CSGID 10-276 -9.170 10  IDP06511 gene: fms12; LPXTG family cell surface protein Fms12 [Enterococcus faecium DO] AFK58171 [Enterococcus faecium DO]
H.sapiens 33-148 -6.740 9  sp|O43320|FGF16_HUMAN Fibroblast growth factor 16 OS=Homo sapiens GN=FGF16 PE=2 SV=1
HGM_OVER 14-202 -4.060 11  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
NEW_HUMAN_DOMAINS 23-91 -4.760 13  sp|P38435|VKGC_HUMAN Vitamin K-dependent gamma-carboxylase OS=Homo sapiens GN=GGCX PE=1 SV=2
PDB1018 1-301 -9.120 11  4mr0_A mol:protein length:648 Plasmin and fibronectin-binding protein A
PfamA32U 30-176 -6.640 10  PF03548.15; LOLA_PSEPK/34-197; Outer membrane lipoprotein carrier protein LolA
SCOP207 2-176 -7.230 12  d2w7qa_ b.125.1.0 (A:) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}
VFDB 30-276 -9.420 13  [M] COG5434 Endopolygalacturonase
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 COG1018 5-178 -6.160 12  [S] COG5501 Predicted secreted protein
CSGID 1-114 -6.110 13  IDP01226 Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) BA_4187 [Bacillus anthracis str. Ames]
H.sapiens 19-135 -7.330 16  sp|A2RUT3|TMM89_HUMAN(removed signalp:1-24) Transmembrane protein 89 OS=Homo sapiens GN=TMEM89 PE=2 SV=1
HGM_OVER 1-180 -4.250 8  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
NEW_HUMAN_DOMAINS 122-175 -5.460 20  sp|Q96JN8|NEUL4_HUMAN Neuralized-like protein 4 OS=Homo sapiens GN=NEURL4 PE=1 SV=2
PDB1018 19-132 -9.090 13  3ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein
PfamA32U 26-88 -6.060 21  PF08965.10; X2GUQ4_9GAMM/1-117; Domain of unknown function (DUF1870 topsan)
SCOP207 28-178 -7.410 15  d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
VFDB 5-178 -6.160 12  [S] COG5501 Predicted secreted protein
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 COG1018 151-683 -11.100 11  [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
176-556 -46.700 21  [T] COG5002 Signal transduction histidine kinase
565-696 -31.300 16  [T] COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases
576-788 -30.800 9  [T] COG2198 FOG: HPt domain
CSGID 20-797 -113.000 17  IDP91425 aerobic respiration control sensor protein ArcB [Vibrio vulnificus CMCP6] VV1_0550 [Vibrio vulnificus CMCP6]
170-801 -116.000 18  IDP04166 sensory box sensor histidine kinase/response regulator VieS [Vibrio cholerae O1 biovar eltor str. N16961] VC1653 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 161-412 -17.400 7  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2
223-492 -18.400 9  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2
300-583 -32.300 12  sp|Q16654|PDK4_HUMAN [Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Homo sapiens GN=PDK4 PE=1 SV=1
452-729 -29.700 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2
HGM_OVER 435-670 -3.250 12  PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;
NEW_HUMAN_DOMAINS 551-742 -30.600 9  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2
PDB1018 176-562 -45.200 17  4i5s_A mol:protein length:450 Putative histidine kinase CovS; VicK-like protein
300-557 -59.900 26  4q20_A mol:protein length:268 Sensor protein DivL
450-694 -58.200 19  2ayx_A mol:protein length:254 Sensor kinase protein rcsC
PfamA32U 302-745 -9.600 10  PF15449.6; F7B3J9_HORSE/1-1249; Retinal protein
327-391 -25.600 30  PF00512.25; Q55783_SYNY3/185-253; His Kinase A (phospho-acceptor) domain
407-535 -11.000 9  PF10090.9; Q20YL4_RHOPB/92-213; Histidine phosphotransferase C-terminal domain
438-545 -36.500 43  PF02518.26; O52937_9CYAN/626-739; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
567-807 -15.500 9  PF01993.18; F6D7B4_METPW/3-276; methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase
570-681 -27.800 20  PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain
SCOP207 295-394 -21.600 27  d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
395-548 -47.500 30  d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
566-685 -37.700 22  d4euka_ c.23.1.0 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
VFDB 151-683 -11.100 11  [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
176-556 -46.700 21  [T] COG5002 Signal transduction histidine kinase
565-696 -31.300 16  [T] COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases
576-788 -30.800 9  [T] COG2198 FOG: HPt domain
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 COG1018 2-432 -117.000 35  [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
CSGID 2-432 -119.000 31  IDP91185 AAC46367 [Vibrio cholerae]
H.sapiens 1-154 -19.700 11  sp|O95263|PDE8B_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8B OS=Homo sapiens GN=PDE8B PE=1 SV=2
1-224 -16.300 9  sp|O60658|PDE8A_HUMAN High affinity cAMP-specific and IBMX-insensitive 3`,5`-cyclic phosphodiesterase 8A OS=Homo sapiens GN=PDE8A PE=1 SV=2
102-354 -13.900 15  sp|Q96S55|WRIP1_HUMAN ATPase WRNIP1 OS=Homo sapiens GN=WRNIP1 PE=1 SV=2
124-422 -11.700 13  sp|Q9NU22|MDN1_HUMAN Midasin OS=Homo sapiens GN=MDN1 PE=1 SV=2
HGM_OVER 4-282 -3.340 10  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
NEW_HUMAN_DOMAINS 3-115 -21.200 13  sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2
PDB1018 3-432 -117.000 39  4l4u_A mol:protein length:447 Transcriptional regulator (NtrC family)
PfamA32U 4-113 -36.700 30  PF00072.24; RSSB_ECOLI/10-121; Response regulator receiver domain
62-350 -21.000 14  PF08298.11; YEAG_ECOLI/19-380; PrkA AAA domain
127-293 -76.200 46  PF00158.26; Q8E8E7_SHEON/154-320; Sigma-54 interaction domain
389-429 -12.800 43  PF02954.19; Q9KQ67_VIBCH/430-470; Bacterial regulatory protein, Fis family
SCOP207 3-121 -41.200 26  d4d6ya_ c.23.1.0 (A:) automated matches {Brucella abortus [TaxId: 235]}
126-373 -97.900 38  d5ep2a1 c.37.1.0 (A:141-387) automated matches {Photobacterium angustum [TaxId: 661]}
339-432 -26.400 27  d1ntca1 a.4.1.12 (A:380-469) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
VFDB 2-432 -117.000 35  [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 COG1018 115-211 -7.090 8  [S] KOG3326 Uncharacterized conserved protein
CSGID 135-209 -7.480 6  IDP95119 gene: aadA; aminoglycoside resistance protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001338669 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
H.sapiens 113-206 -9.350 12  sp|Q8IWY8|ZSC29_HUMAN Zinc finger and SCAN domain-containing protein 29 OS=Homo sapiens GN=ZSCAN29 PE=1 SV=2
HGM_OVER 133-212 -5.230 5  HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;
NEW_HUMAN_DOMAINS 137-205 -5.560 10  sp|Q8N0U7|CA087_HUMAN Uncharacterized protein C1orf87 OS=Homo sapiens GN=C1orf87 PE=2 SV=1
PDB1018 136-210 -7.660 18  3sok_A mol:protein length:151 Fimbrial protein
PfamA32U 2-211 -55.400 13  PF09357.10; F4C775_SPHS2/62-280; RteC protein
SCOP207 136-210 -7.660 18  d3soka_ d.24.1.0 (A:) automated matches {Dichelobacter nodosus [TaxId: 870]}
VFDB 115-211 -7.090 8  [S] KOG3326 Uncharacterized conserved protein
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 COG1018 1-234 -7.230 11  [S] COG1667 Uncharacterized protein conserved in archaea
CSGID 193-310 -7.450 12  IDP90316 gene: hctA; Histone-Like Developmental Protein [Chlamydia trachomatis D/UW-3/CX] CT_743 [Chlamydia trachomatis D/UW-3/CX]
H.sapiens 222-312 -7.750 6  sp|Q8IY63|AMOL1_HUMAN Angiomotin-like protein 1 OS=Homo sapiens GN=AMOTL1 PE=1 SV=1
HGM_OVER 222-315 -4.160 6  PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;
NEW_HUMAN_DOMAINS 11-70 -6.010 8  sp|O15014|ZN609_HUMAN Zinc finger protein 609 OS=Homo sapiens GN=ZNF609 PE=1 SV=2
PDB1018 33-86 -7.170 13  2m4l_A mol:protein length:99 protein BT_0846
PfamA32U 222-312 -7.660 9  PF05604.11; OSER1_MOUSE/1-180; Protein of unknown function (DUF776 topsan)
SCOP207 9-81 -6.830 9  d1ukfa1 d.3.1.10 (A:81-267) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 1-234 -7.230 11  [S] COG1667 Uncharacterized protein conserved in archaea
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 COG1018 20-124 -5.660 11  [K] COG3561 Phage anti-repressor protein
CSGID 3-132 -5.190 16  IDP90358 hypothetical protein CT273 [Chlamydia trachomatis D/UW-3/CX] CT273 [Chlamydia trachomatis D/UW-3/CX]
H.sapiens 41-210 -6.640 8  sp|Q12923|PTN13_HUMAN Tyrosine-protein phosphatase non-receptor type 13 OS=Homo sapiens GN=PTPN13 PE=1 SV=2
HGM_OVER 2-191 -3.900 7  PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)
NEW_HUMAN_DOMAINS 101-135 -5.370 17  sp|Q9ULD9|ZN608_HUMAN Zinc finger protein 608 OS=Homo sapiens GN=ZNF608 PE=1 SV=4
PDB1018 98-151 -7.030 24  2m4l_A mol:protein length:99 protein BT_0846
PfamA32U 98-151 -7.000 14  PF18692.1; R6DJM9_9BACE/35-128; Family of unknown function (DUF5640 topsan)
SCOP207 99-146 -6.540 10  d1ukfa1 d.3.1.10 (A:81-267) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 20-124 -5.660 11  [K] COG3561 Phage anti-repressor protein
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 COG1018 1-82 -7.540 17  [C] COG3052 Citrate lyase, gamma subunit
CSGID 1-104 -5.370 10  IDP91498 translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] VP1675 [Vibrio parahaemolyticus RIMD 2210633]
H.sapiens 1-106 -6.610 14  sp|Q68D51|DEN2C_HUMAN DENN domain-containing protein 2C OS=Homo sapiens GN=DENND2C PE=2 SV=2
HGM_OVER 8-106 -3.610 7  PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;
NEW_HUMAN_DOMAINS 62-101 -5.450 10  sp|Q13480|GAB1_HUMAN GRB2-associated-binding protein 1 OS=Homo sapiens GN=GAB1 PE=1 SV=2
PDB1018 52-104 -7.920 17  2vt1_B mol:protein length:93 SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAS
PfamA32U 7-81 -10.300 15  PF06857.11; CITD_STRU0/4-85; Malonate decarboxylase delta subunit (MdcD)
SCOP207 38-104 -7.770 16  d2jlia_ d.367.1.0 (A:) automated matches {Yersinia pestis [TaxId: 632]}
VFDB 1-82 -7.540 17  [C] COG3052 Citrate lyase, gamma subunit
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 COG1018 44-150 -6.830 10  [P] COG2156 K+-transporting ATPase, c chain
CSGID 45-87 -6.810 20  IDP91328 ribonuclease G and E [Vibrio vulnificus CMCP6] VV2_0290 [Vibrio vulnificus CMCP6]
H.sapiens 2-152 -6.960 9  sp|Q9Y2I7|FYV1_HUMAN 1-phosphatidylinositol-3-phosphate 5-kinase OS=Homo sapiens GN=PIKFYVE PE=1 SV=3
HGM_OVER 35-90 -3.210 7  PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;
NEW_HUMAN_DOMAINS 48-93 -5.590 8  tr|F8WCB3|F8WCB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=STAG1 PE=4 SV=1
PDB1018 44-150 -6.780 10  5mrw_C mol:protein length:187 Potassium-transporting ATPase KdpC subunit
PfamA32U 33-80 -6.120 15  PF11937.8; Q0V1U9_PHANO/70-244; Protein of unknown function (DUF3455 topsan)
SCOP207 21-94 -6.830 9  d1ukfa1 d.3.1.10 (A:81-267) Avirulence protein Avrpph3 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
VFDB 44-150 -6.830 10  [P] COG2156 K+-transporting ATPase, c chain

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;