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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 CSGID 1-68 -7.050 17  IDP05443 hypothetical protein lmo0463 [Listeria monocytogenes EGD-e] lmo0463 [Listeria monocytogenes EGD-e]
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 CSGID 1-125 -5.760 IDP05554 hypothetical protein CD3669 [Clostridium difficile 630] CD3669 [Peptoclostridium difficile 630]
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 CSGID 6-222 -9.780 IDP05036 hypothetical protein BA_1663 [Bacillus anthracis str. Ames] BA_1663 [Bacillus anthracis str. Ames]
32-119 -13.800 14  IDP06125 DNA-binding protein HU [Helicobacter pylori J99] NP_223492 [Helicobacter pylori J99]
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 CSGID 24-155 -6.100 15  IDP06398 gene: ORF52; ORF52 [Human herpesvirus 8] YP_001129405 [Human herpesvirus 8]
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 CSGID 1-56 -6.930 13  IDP91669 AGSK1_HUMAN [Homo sapiens]
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 CSGID 1-143 -7.390 IDP05460 putative lipoprotein [Bacillus anthracis str. Ames] BA_0985 [Bacillus anthracis str. Ames]
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 CSGID 23-119 -6.430 10  IDP92084 DNA-directed RNA polymerase III subunit, putative [Toxoplasma gondii ME49] TGME49_112250 [Toxoplasma gondii ME49]
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 CSGID 1-181 -24.700 14  IDP92633 gene: yafP; predicted acyltransferase with acyl-CoA N-acyltransferase domain [Escherichia coli str. K-12 substr. MG1655] b0234 [Escherichia coli str. K-12 substr. MG1655]
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 CSGID 1-332 -64.700 13  IDP91442 ABC-type phosphate transport system, periplasmic component [Vibrio vulnificus CMCP6] VV1_0466 [Vibrio vulnificus CMCP6]
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 CSGID 237-356 -7.260 13  IDP05561 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2026 [Listeria monocytogenes EGD-e]
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 CSGID 204-257 -8.100 29  CPX_91754_91753 Complex of TVB1_HUMAN with TSST_STAAU [Undefined organism]
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 CSGID 10-276 -9.170 10  IDP06511 gene: fms12; LPXTG family cell surface protein Fms12 [Enterococcus faecium DO] AFK58171 [Enterococcus faecium DO]
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 CSGID 1-114 -6.110 13  IDP01226 Peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) BA_4187 [Bacillus anthracis str. Ames]
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 CSGID 20-797 -113.000 17  IDP91425 aerobic respiration control sensor protein ArcB [Vibrio vulnificus CMCP6] VV1_0550 [Vibrio vulnificus CMCP6]
170-801 -116.000 18  IDP04166 sensory box sensor histidine kinase/response regulator VieS [Vibrio cholerae O1 biovar eltor str. N16961] VC1653 [Vibrio cholerae O1 biovar El Tor str. N16961]
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 CSGID 2-432 -119.000 31  IDP91185 AAC46367 [Vibrio cholerae]
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 CSGID 135-209 -7.480 IDP95119 gene: aadA; aminoglycoside resistance protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001338669 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 CSGID 193-310 -7.450 12  IDP90316 gene: hctA; Histone-Like Developmental Protein [Chlamydia trachomatis D/UW-3/CX] CT_743 [Chlamydia trachomatis D/UW-3/CX]
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 CSGID 3-132 -5.190 16  IDP90358 hypothetical protein CT273 [Chlamydia trachomatis D/UW-3/CX] CT273 [Chlamydia trachomatis D/UW-3/CX]
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 CSGID 1-104 -5.370 10  IDP91498 translocation protein in type III secretion [Vibrio parahaemolyticus RIMD 2210633] VP1675 [Vibrio parahaemolyticus RIMD 2210633]
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 CSGID 45-87 -6.810 20  IDP91328 ribonuclease G and E [Vibrio vulnificus CMCP6] VV2_0290 [Vibrio vulnificus CMCP6]

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.