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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4778next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|29345411|ref|NP_808914.1| hypothetical protein BT_0001 [Bacteroides thetaiotaomicron VPI-5482] 205 VFDB 7-95 -6.480 14  [J] COG0198 Ribosomal protein L24
2 gi|29345412|ref|NP_808915.1|(removed signal:1-19) hypothetical protein BT_0002 [Bacteroides thetaiotaomicron VPI-5482] 312 VFDB 95-193 -4.980 [J] COG1588 RNase P/RNase MRP subunit p29
3 gi|29345413|ref|NP_808916.1| hypothetical protein BT_0003 [Bacteroides thetaiotaomicron VPI-5482] 258 VFDB 31-117 -15.100 12  [L] COG0776 Bacterial nucleoid DNA-binding protein
4 gi|29345414|ref|NP_808917.1| hypothetical protein BT_0004 [Bacteroides thetaiotaomicron VPI-5482] 222 VFDB 16-162 -6.450 14  [T] KOG3294 WW domain binding protein WBP-2, contains GRAM domain
5 gi|29345415|ref|NP_808918.1| 30S ribosomal protein S17 BT_0005 [Bacteroides thetaiotaomicron VPI-5482] 178 VFDB 1-177 -65.100 18  [J] KOG1728 40S ribosomal protein S11
6 gi|29345416|ref|NP_808919.1| hypothetical protein BT_0006 [Bacteroides thetaiotaomicron VPI-5482] 148 VFDB 5-140 -7.470 19  [G] COG3732 Phosphotransferase system sorbitol-specific component IIBC
7 gi|29345417|ref|NP_808920.1| hypothetical protein BT_0007 [Bacteroides thetaiotaomicron VPI-5482] 130 VFDB 28-123 -8.230 15  [S] KOG2889 Predicted PRP38-like splicing factor
8 gi|29345418|ref|NP_808921.1| hypothetical protein BT_0008 [Bacteroides thetaiotaomicron VPI-5482] 181 VFDB 4-177 -26.500 10  [R] KOG4144 Arylalkylamine N-acetyltransferase
9 gi|29345419|ref|NP_808922.1|(removed signal:1-26) phosphate-binding periplasmic protein precursor, putative ABC transporter BT_0009 [Bacteroides thetaiotaomicron VPI-5482] 343 VFDB 1-343 -98.300 29  [P] COG0226 ABC-type phosphate transport system, periplasmic component
10 gi|29345420|ref|NP_808923.1| hypothetical protein BT_0010 [Bacteroides thetaiotaomicron VPI-5482] 357 VFDB 274-357 -9.080 23  [K] KOG4797 Transcriptional regulator
11 gi|29345421|ref|NP_808924.1| hypothetical protein BT_0011 [Bacteroides thetaiotaomicron VPI-5482] 282 VFDB 132-271 -8.790 12  [R] KOG4264 Nucleo-cytoplasmic protein MLN51
12 gi|29345422|ref|NP_808925.1|(removed signal:1-34) hypothetical protein BT_0012 [Bacteroides thetaiotaomicron VPI-5482] 354 VFDB 30-276 -9.420 13  [M] COG5434 Endopolygalacturonase
13 gi|29345423|ref|NP_808926.1| hypothetical protein BT_0013 [Bacteroides thetaiotaomicron VPI-5482] 180 VFDB 5-178 -6.160 12  [S] COG5501 Predicted secreted protein
14 gi|29345424|ref|NP_808927.1| two-component system histidine kinase with response regulator receiver domain BT_0014 [Bacteroides thetaiotaomicron VPI-5482] 807 VFDB 151-683 -11.100 11  [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
176-556 -46.700 21  [T] COG5002 Signal transduction histidine kinase
565-696 -31.300 16  [T] COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases
576-788 -30.800 [T] COG2198 FOG: HPt domain
15 gi|29345425|ref|NP_808928.1| rteB, two-component system response regulator BT_0015 [Bacteroides thetaiotaomicron VPI-5482] 432 VFDB 2-432 -117.000 35  [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
16 gi|29345426|ref|NP_808929.1| hypothetical protein BT_0016 [Bacteroides thetaiotaomicron VPI-5482] 212 VFDB 115-211 -7.090 [S] KOG3326 Uncharacterized conserved protein
17 gi|29345427|ref|NP_808930.1| hypothetical protein BT_0017 [Bacteroides thetaiotaomicron VPI-5482] 315 VFDB 1-234 -7.230 11  [S] COG1667 Uncharacterized protein conserved in archaea
18 gi|29345428|ref|NP_808931.1| hypothetical protein BT_0018 [Bacteroides thetaiotaomicron VPI-5482] 238 VFDB 20-124 -5.660 11  [K] COG3561 Phage anti-repressor protein
19 gi|29345429|ref|NP_808932.1| hypothetical protein BT_0019 [Bacteroides thetaiotaomicron VPI-5482] 106 VFDB 1-82 -7.540 17  [C] COG3052 Citrate lyase, gamma subunit
20 gi|29345430|ref|NP_808933.1| hypothetical protein BT_0020 [Bacteroides thetaiotaomicron VPI-5482] 152 VFDB 44-150 -6.830 10  [P] COG2156 K+-transporting ATPase, c chain

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.