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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4053next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15894240|ref|NP_347589.1| hypothetical protein (CA_C0953) [Clostridium acetobutylicum ATCC 824] 132 PfamA32U 42-132 -7.970 12  PF00168.30; BON3_ARATH/52-157; C2 domain
2 gi|15895268|ref|NP_348617.1| ABC-type transport system, ATPase component (CA_C1998) [Clostridium acetobutylicum ATCC 824] 224 PfamA32U 18-224 -36.200 13  PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
24-173 -43.900 28  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
3 gi|15895079|ref|NP_348428.1| ribosome-binding factor A (CA_C1803) [Clostridium acetobutylicum ATCC 824] 121 PfamA32U 5-109 -54.800 37  PF02033.18; R5QDT1_9FIRM/5-110; Ribosome-binding factor A
4 gi|15896238|ref|NP_349587.1| dimethyladenosine transferase (CA_C2986) [Clostridium acetobutylicum ATCC 824] 276 PfamA32U 14-270 -104.000 49  PF00398.20; RSMA_BACSU/19-283; Ribosomal RNA adenine dimethylase
5 gi|15894673|ref|NP_348022.1| phosphoribosylglycinamide formyltransferase (CA_C1394) [Clostridium acetobutylicum ATCC 824] 204 PfamA32U 2-185 -78.800 40  PF00551.19; PUR2_DROME/1154-1336; Formyl transferase
6 gi|15894664|ref|NP_348013.1| Alpha-ribazole-5'-phosphate phosphatase, CobC (CA_C1385) [Clostridium acetobutylicum ATCC 824] 191 PfamA32U 5-191 -89.400 27  PF00300.22; Q3Z6L9_DEHM1/5-197; Histidine phosphatase superfamily (branch 1)
7 gi|15894369|ref|NP_347718.1| Beta-glucosidase family protein (CA_C1084) [Clostridium acetobutylicum ATCC 824] 474 PfamA32U 2-469 -148.000 61  PF00232.18; BGLC_BACSU/5-475; Glycosyl hydrolase family 1
8 gi|15896898|ref|NP_350247.1| alpha/beta fold family hydrolase (CA_C3665) [Clostridium acetobutylicum ATCC 824] 265 PfamA32U 7-264 -55.800 15  PF02273.15; C7BN06_PHOAA/8-301; Acyl transferase
9 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 500 PfamA32U 5-260 -28.400 15  PF00580.21; REP_HAEIN/3-266; UvrD/REP helicase N-terminal domain
12-497 -16.100 12  PF04257.14; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
10 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 500 PfamA32U 42-457 -44.900 13  PF04257.14; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
11 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 500 PfamA32U 2-179 -9.900 13  PF04257.14; RECC_ECOLI/1-806; Exodeoxyribonuclease V, gamma subunit
20-156 -13.600 19  PF13361.6; K9YCL2_HALP7/269-792; UvrD-like helicase C-terminal domain
274-500 -79.400 36  PF12705.7; D6XUK2_BACIE/780-1125; PD-(D/E)XK nuclease superfamily
12 gi|15895531|ref|NP_348880.1| ATP-dependent exonuclease synthesis protein AddB (CA_C2263) [Clostridium acetobutylicum ATCC 824] 403 PfamA32U 24-364 -108.000 34  PF12705.7; D6XUK2_BACIE/780-1125; PD-(D/E)XK nuclease superfamily
13 gi|15895492|ref|NP_348841.1| chemotaxis protein CheW (CA_C2224) [Clostridium acetobutylicum ATCC 824] 147 PfamA32U 8-143 -19.500 18  PF01584.19; Q8XQ78_RALSO/559-691; CheW-like domain
14 gi|15894672|ref|NP_348021.1| phosphoribosylaminoimidazole synthetase (CA_C1393) [Clostridium acetobutylicum ATCC 824] 332 PfamA32U 39-159 -28.800 22  PF00586.24; E6WZK0_NITSE/47-154; AIR synthase related protein, N-terminal domain
173-328 -48.300 43  PF02769.22; PUR5_NEIMB/175-337; AIR synthase related protein, C-terminal domain
15 gi|15893880|ref|NP_347229.1| riboflavin synthase subunit alpha (CA_C0591) [Clostridium acetobutylicum ATCC 824] 213 PfamA32U 97-181 -41.800 48  PF00677.17; B3EB72_GEOLS/99-183; Lumazine binding domain
16 gi|15893578|ref|NP_346927.1| hypothetical protein (CA_C0286) [Clostridium acetobutylicum ATCC 824] 244 PfamA32U 4-182 -41.400 14  PF12730.7; R6N7Z5_9FIRM/4-186; ABC-2 family transporter protein
4-243 -22.000 11  PF12679.7; E4NSW3_HALBP/4-306; ABC-2 family transporter protein
17 gi|15896862|ref|NP_350211.1| oligopeptide ABC transporter, ATPase component (CA_C3628) [Clostridium acetobutylicum ATCC 824] 322 PfamA32U 3-241 -29.100 11  PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
31-183 -33.600 24  PF00005.27; YTFR_ECOLI/25-174; ABC transporter
234-301 -31.700 38  PF08352.12; Q8TTX6_METAC/231-290; Oligopeptide/dipeptide transporter, C-terminal region
18 gi|15895331|ref|NP_348680.1| segregation and condensation protein A (CA_C2061) [Clostridium acetobutylicum ATCC 824] 249 PfamA32U 20-244 -52.700 15  PF02616.14; P74212_SYNY3/16-259; Segregation and condensation protein ScpA
19 gi|15894096|ref|NP_347445.1| hydrogenase formation factor (hypE) (CA_C0809) [Clostridium acetobutylicum ATCC 824] 335 PfamA32U 37-149 -33.700 18  PF00586.24; E6WZK0_NITSE/47-154; AIR synthase related protein, N-terminal domain
67-308 -11.500 11  PF12818.7; VG75_EHV2/265-542; dsDNA viral tegument protein
20 gi|15895945|ref|NP_349294.1| DNA helicase (CA_C2687) [Clostridium acetobutylicum ATCC 824] 714 PfamA32U 19-185 -69.900 40  PF00270.29; SGS1_YEAST/680-854; DEAD/DEAH box helicase
20-358 -17.500 13  PF06862.12; UTP25_SCHPO/187-651; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25
22-688 -13.000 10  PF02399.15; OBP_VZVD/13-828; Origin of replication binding protein
215-324 -29.100 27  PF00271.31; Q9ZCQ0_RICPR/221-329; Helicase conserved C-terminal domain
336-399 -25.600 30  PF16124.5; R7J4M7_9BACT/340-402; RecQ zinc-binding
401-509 -28.900 28  PF09382.10; Q5F644_NEIG1/401-509; RQC domain
518-585 -24.400 38  PF00570.23; Q8G567_BIFLO/575-642; HRDC domain
616-704 -20.000 34  PF14493.6; C0QFE1_DESAH/739-826; Helix-turn-helix domain

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;