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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 4053< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 gi|15896427|ref|NP_349776.1|(removed signalp:1-33) oligopeptide ABC transporter, periplasmic binding component (CA_C3179) [Clostridium acetobutylicum ATCC 824] 534 PfamA32U 15-494 -31.600 9  PF17374.2; Q8EV07_MYCPE/37-965; Family of unknown function (DUF5396 topsan)
70-453 -84.000 22  PF00496.22; Q882P9_PSESM/71-433; Bacterial extracellular solute-binding proteins, family 5 Middle
22 gi|15895557|ref|NP_348906.1| biotin carboxyl carrier protein (CA_C2289) [Clostridium acetobutylicum ATCC 824] 129 PfamA32U 1-126 -11.300 15  PF04952.14; Q87HF0_VIBPA/56-331; Succinylglutamate desuccinylase / Aspartoacylase family
52-126 -57.200 22  PF00364.22; BCCP_SOYBN/186-260; Biotin-requiring enzyme
23 gi|15894699|ref|NP_348048.1| hypothetical protein (CA_C1420) [Clostridium acetobutylicum ATCC 824] 468 PfamA32U 13-277 -41.200 19  PF01875.17; Y403_METJA/6-285; Memo-like protein
302-464 -61.100 23  PF01871.17; A4HK43_LEIBR/8-175; AMMECR1
24 gi|15004730|ref|NP_149190.1| hypothetical protein (CA_P0026) [Clostridium acetobutylicum ATCC 824] 192 PfamA32U 57-121 -8.200 13  PF15241.6; F6V6J0_CALJA/8-113; Cylicin N-terminus
25 gi|15004854|ref|NP_149314.1| integrin-like repeat-containing lysozyme (CA_P0151) [Clostridium acetobutylicum ATCC 824] 752 PfamA32U 46-112 -23.500 23  PF13517.6; A0LIQ3_SYNFM/289-356; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella
96-479 -29.900 10  PF15907.5; H0ZSE7_TAEGU/49-383; Integrin-alpha FG-GAP repeat-containing protein 2
627-732 -17.000 15  PF00959.19; ENLYS_BPT4/24-148; Phage lysozyme
26 gi|15004805|ref|NP_149265.1| hypothetical protein (CA_P0102) [Clostridium acetobutylicum ATCC 824] 500 PfamA32U 47-376 -73.700 19  PF03176.15; MMPL5_MYCTU/63-393; MMPL family
90-466 -29.200 12  PF00873.19; Q9I0Y8_PSEAE/3-1040; AcrB/AcrD/AcrF family
27 gi|15004805|ref|NP_149265.1| hypothetical protein (CA_P0102) [Clostridium acetobutylicum ATCC 824] 500 PfamA32U 1-123 -39.200 22  PF03176.15; MMPL5_MYCTU/63-393; MMPL family
134-500 -20.900 5  PF10174.9; H2T771_TAKRU/113-856; RIM-binding protein of the cytomatrix active zone
28 gi|15004805|ref|NP_149265.1| hypothetical protein (CA_P0102) [Clostridium acetobutylicum ATCC 824] 500 PfamA32U 2-377 -20.600 6  PF15358.6; G1M5D4_AILME/26-577; Testis-specific serine kinase substrate
303-498 -32.300 17  PF03176.15; MMPL5_MYCTU/63-393; MMPL family
29 gi|15004805|ref|NP_149265.1| hypothetical protein (CA_P0102) [Clostridium acetobutylicum ATCC 824] 308 PfamA32U 49-304 -64.700 17  PF03176.15; MMPL5_MYCTU/63-393; MMPL family
30 gi|15896509|ref|NP_349858.1| hypothetical protein (CA_C3264) [Clostridium acetobutylicum ATCC 824] 133 PfamA32U 40-114 -38.500 38  PF09579.10; R5VJ71_9FIRM/43-120; Sporulation protein YtfJ (Spore_YtfJ)
31 gi|15896412|ref|NP_349761.1| lysine-specific permease (CA_C3164) [Clostridium acetobutylicum ATCC 824] 489 PfamA32U 24-471 -39.300 10  PF13520.6; Q023N1_SOLUE/24-483; Amino acid permease
32 gi|15895899|ref|NP_349248.1| trigger factor (CA_C2641) [Clostridium acetobutylicum ATCC 824] 431 PfamA32U 4-145 -54.400 30  PF05697.13; R7FFD8_9FIRM/4-146; Bacterial trigger factor protein (TF)
158-240 -13.300 15  PF00254.28; A0A0N4TXG0_BRUPA/14-105; FKBP-type peptidyl-prolyl cis-trans isomerase
264-425 -46.300 35  PF05698.14; TIG_BACHD/264-425; Bacterial trigger factor protein (TF) C-terminus
33 gi|15895101|ref|NP_348450.1| homoserine O-succinyltransferase (CA_C1825) [Clostridium acetobutylicum ATCC 824] 301 PfamA32U 2-299 -106.000 54  PF04204.16; A4VVY3_STRSY/19-316; Homoserine O-succinyltransferase
34 gi|15894638|ref|NP_347987.1|(removed signalp:1-33) xylanase/chitin deacetylase (CA_C1359) [Clostridium acetobutylicum ATCC 824] 244 PfamA32U 53-178 -51.900 25  PF01522.21; CDA1_YEAST/102-222; Polysaccharide deacetylase
57-244 -21.900 8  PF10096.9; A6LXX4_CLOB8/129-377; Uncharacterized protein conserved in bacteria (DUF2334 topsan)
35 gi|15004813|ref|NP_149273.1| NH2-acetyltransferase (CA_P0110) [Clostridium acetobutylicum ATCC 824] 137 PfamA32U 2-124 -36.700 16  PF12568.8; Q2NWW2_SODGM/2-130; Acetyltransferase (GNAT) domain, PanZ
36 gi|15893349|ref|NP_346698.1| hypothetical protein (CA_C0051) [Clostridium acetobutylicum ATCC 824] 66 PfamA32U 9-54 -6.810 20  PF14283.6; D6DIY1_CLOSC/53-201; Domain of unknown function (DUF4366 topsan)
37 gi|15895869|ref|NP_349218.1| hypothetical protein (CA_C2611) [Clostridium acetobutylicum ATCC 824] 207 PfamA32U 3-204 -94.700 63  PF16161.5; R6QKB8_9CLOT/3-202; Domain of unknown function (DUF4867 topsan)
38 gi|15894130|ref|NP_347479.1|(removed signalp:1-30) ribonuclease precursor (barnase), secreted (CA_C0843) [Clostridium acetobutylicum ATCC 824] 126 PfamA32U 42-124 -46.400 27  PF00545.20; E4NAW1_KITSK/113-192; ribonuclease
39 gi|15895875|ref|NP_349224.1|(removed signalp:1-34) methyl-accepting chemotaxis protein (CA_C2617) [Clostridium acetobutylicum ATCC 824] 630 PfamA32U 1-232 -16.100 9  PF02743.18; D3EMN3_GEOS4/45-297; Cache domain
268-322 -12.000 25  PF00672.25; P71914_MYCTU/462-514; HAMP domain
314-624 -11.000 11  PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)
356-597 -43.200 9  PF03532.13; O50963_BORBU/3-255; OMS28 porin
40 gi|15896733|ref|NP_350082.1| transcriptional regulator (CA_C3496) [Clostridium acetobutylicum ATCC 824] 106 PfamA32U 12-103 -56.300 37  PF01638.17; YYBR_BACSU/22-112; HxlR-like helix-turn-helix

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.