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Results: 1-20 of 3877next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 ACL93468.1 301 COG1018 25-296 -89.000 28  [S] COG1806 Uncharacterized protein conserved in bacteria
CSGID 170-292 -6.970 13  IDP02625 gene: aroK; shikimate kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4457 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 166-299 -9.870 15  sp|Q9Y3D8|KAD6_HUMAN Adenylate kinase isoenzyme 6 OS=Homo sapiens GN=TAF9 PE=1 SV=1
HGM_OVER 86-301 -2.600 4  PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;
NEW_HUMAN_DOMAINS 148-207 -5.360 18  sp|Q9Y6X0|SETBP_HUMAN SET-binding protein OS=Homo sapiens GN=SETBP1 PE=1 SV=3
PDB1018 3-299 -87.300 33  5d0n_A mol:protein length:413 Pyruvate, phosphate dikinase regulatory protein, chloroplastic
PfamA32U 33-287 -91.300 32  PF03618.14; PSRP_LARHH/8-265; Kinase/pyrophosphorylase
SCOP207 171-291 -10.600 16  d3kb2a1 c.37.1.1 (A:2-165) automated matches {Bacillus subtilis [TaxId: 1423]}
VFDB 25-296 -89.000 28  [S] COG1806 Uncharacterized protein conserved in bacteria
2 ACL93469.1 199 COG1018 3-198 -96.400 45  [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation
CSGID 1-199 -87.100 28  IDP91354 gene: maf; Maf-like protein [Vibrio vulnificus CMCP6] VV1_3015 [Vibrio vulnificus CMCP6]
H.sapiens 1-196 -76.100 27  sp|O95671|ASML_HUMAN N-acetylserotonin O-methyltransferase-like protein OS=Homo sapiens GN=ASMTL PE=1 SV=3
HGM_OVER 64-184 -4.840 9  HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;
NEW_HUMAN_DOMAINS 8-102 -6.020 13  sp|O95751|LDOC1_HUMAN Protein LDOC1 OS=Homo sapiens GN=LDOC1 PE=1 SV=1
PDB1018 1-196 -84.400 27  4heb_A mol:protein length:210 Septum formation protein Maf
PfamA32U 6-193 -83.400 26  PF02545.14; D7DNK7_METV0/10-194; Maf-like protein
SCOP207 1-196 -84.800 26  d4oo0a_ c.51.4.0 (A:) automated matches {Burkholderia cenocepacia [TaxId: 216591]}
VFDB 3-198 -96.400 45  [D] COG0424 Nucleotide-binding protein implicated in inhibition of septum formation
3 ACL93470.1 285 COG1018 5-285 -92.900 34  [E] COG0169 Shikimate 5-dehydrogenase
CSGID 5-285 -92.900 34  IDP90792 gene: aroE; shikimate 5-dehydrogenase [Vibrio cholerae O1 biovar eltor str. N16961] VC0056 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 15-247 -13.500 14  sp|Q9UDR5|AASS_HUMAN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1
100-251 -14.900 17  sp|Q9UDR5|AASS_HUMAN Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1
HGM_OVER 120-285 -3.920 9  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 68-184 -4.200 7  tr|A6NMH3|A6NMH3_HUMAN Uncharacterized protein OS=Homo sapiens GN=TNNI3K PE=4 SV=1
PDB1018 12-285 -92.800 30  3don_A mol:protein length:277 Shikimate dehydrogenase
PfamA32U 14-96 -41.600 29  PF08501.11; ARO1_EMENI/1294-1374; Shikimate dehydrogenase substrate binding domain
126-252 -18.100 26  PF01488.20; HEM1_PSEAE/169-304; Shikimate / quinate 5-dehydrogenase
SCOP207 1-109 -54.300 36  d3tnla1 c.58.1.0 (A:4-112) automated matches {Listeria monocytogenes [TaxId: 169963]}
110-283 -62.500 30  d2egga2 c.2.1.7 (A:123-297) Shikimate 5-dehydrogenase AroE {Geobacillus kaustophilus [TaxId: 1462]}
VFDB 5-285 -92.900 34  [E] COG0169 Shikimate 5-dehydrogenase
4 ACL93471.1 199 COG1018 1-193 -88.300 38  [H] COG0237 Dephospho-CoA kinase
CSGID 1-197 -88.200 35  IDP02800 gene: coaE; dephospho-CoA kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4828 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 1-198 -81.300 30  sp|Q8WVC6|DCAKD_HUMAN Dephospho-CoA kinase domain-containing protein OS=Homo sapiens GN=DCAKD PE=1 SV=1
HGM_OVER 133-192 -2.460 15  HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;
NEW_HUMAN_DOMAINS 6-81 -4.680 11  sp|Q92835|SHIP1_HUMAN Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1 OS=Homo sapiens GN=INPP5D PE=1 SV=2
PDB1018 1-199 -85.100 31  1vhl_A mol:protein length:218 Dephospho-CoA kinase
PfamA32U 2-181 -82.200 26  PF01121.20; COAE_HAEIN/3-181; Dephospho-CoA kinase
SCOP207 1-199 -85.400 27  d4ttra_ c.37.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}
VFDB 1-193 -88.300 38  [H] COG0237 Dephospho-CoA kinase
5 ACL93472.1 237 COG1018 2-227 -83.700 36  [L] COG0847 DNA polymerase III, epsilon subunit and related 3`-5` exonucleases
CSGID 2-164 -8.140 12  IDP01091 gene: serB; phosphoserine phosphatase STM4578 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 1-173 -58.300 23  sp|Q9BQ50|TREX2_HUMAN Three prime repair exonuclease 2 OS=Homo sapiens GN=TREX2 PE=1 SV=1
1-236 -56.600 16  sp|Q9NSU2|TREX1_HUMAN Three prime repair exonuclease 1 OS=Homo sapiens GN=TREX1 PE=1 SV=1
HGM_OVER 19-149 -3.480 6  HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;
NEW_HUMAN_DOMAINS 5-65 -6.240 19  sp|Q96L96|ALPK3_HUMAN Alpha-protein kinase 3 OS=Homo sapiens GN=ALPK3 PE=2 SV=2
PDB1018 1-227 -86.900 37  5fku_D mol:protein length:243 DNA POLYMERASE III SUBUNIT EPSILON
PfamA32U 1-224 -27.200 18  PF13361.6; K9YCL2_HALP7/269-792; UvrD-like helicase C-terminal domain
5-164 -84.700 46  PF00929.24; DPO3E_ECOLI/9-175; Exonuclease
SCOP207 3-169 -86.400 46  d1j54a_ c.55.3.5 (A:) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
VFDB 2-227 -83.700 36  [L] COG0847 DNA polymerase III, epsilon subunit and related 3`-5` exonucleases
6 ACL93473.1 262 COG1018 13-262 -100.000 49  [I] KOG1680 Enoyl-CoA hydratase
CSGID 1-261 -98.500 39  IDP02329 enoyl-CoA hydratase [Bacillus anthracis str. `Ames Ancestor`] GBAA2551 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 2-261 -97.600 55  sp|P30084|ECHM_HUMAN Enoyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=ECHS1 PE=1 SV=4
HGM_OVER 24-143 -3.430 13  PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;
NEW_HUMAN_DOMAINS 187-261 -5.060 12  sp|Q6Y7W6|PERQ2_HUMAN PERQ amino acid-rich with GYF domain-containing protein 2 OS=Homo sapiens GN=GIGYF2 PE=1 SV=1
PDB1018 3-261 -102.000 57  1dub_A mol:protein length:261 2-ENOYL-COA HYDRATASE
PfamA32U 13-254 -86.400 19  PF00378.20; PKSI_BACSU/10-249; Enoyl-CoA hydratase/isomerase
SCOP207 2-261 -101.000 55  d3moya_ c.14.1.0 (A:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}
VFDB 13-262 -100.000 49  [I] KOG1680 Enoyl-CoA hydratase
7 ACL93474.1 96 COG1018 6-92 -51.100 33  [J] COG0268 Ribosomal protein S20
CSGID 6-91 -50.900 40  IDP90576 gene: rpsT; 30S ribosomal protein S20 [Vibrio cholerae O1 biovar eltor str. N16961] VC0679 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 4-85 -7.100 14  sp|A8MVJ9|YI028_HUMAN Putative UPF0609 protein C4orf27-like OS=Homo sapiens PE=1 SV=1
HGM_OVER 14-83 -3.240 13  PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;
NEW_HUMAN_DOMAINS 4-93 -6.230 13  sp|Q5TAH2|S9A11_HUMAN Sodium/hydrogen exchanger 11 OS=Homo sapiens GN=SLC9A11 PE=2 SV=1
PDB1018 1-96 -52.700 26  1fjg_T mol:protein length:106 30S RIBOSOMAL PROTEIN S20
PfamA32U 7-88 -47.400 34  PF01649.18; D9T9K3_MICAI/2-84; Ribosomal protein S20
SCOP207 8-96 -48.500 27  d1fjgt_ a.7.6.1 (T:) Ribosomal protein S20 {Thermus thermophilus [TaxId: 274]}
VFDB 6-92 -51.100 33  [J] COG0268 Ribosomal protein S20
8 ACL93475.1 490 COG1018 22-490 -117.000 32  [L] COG0593 ATPase involved in DNA replication initiation
CSGID 20-489 -117.000 32  IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]
H.sapiens 100-366 -11.900 18  sp|Q96S55|WRIP1_HUMAN ATPase WRNIP1 OS=Homo sapiens GN=WRNIP1 PE=1 SV=2
150-385 -13.100 14  sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens GN=ATAD3A PE=1 SV=2
159-490 -12.900 11  sp|Q99741|CDC6_HUMAN Cell division control protein 6 homolog OS=Homo sapiens GN=CDC6 PE=1 SV=1
185-402 -14.000 12  sp|Q8NB90|SPAT5_HUMAN Spermatogenesis-associated protein 5 OS=Homo sapiens GN=SPATA5 PE=1 SV=3
185-433 -13.700 16  sp|Q6PL18|ATAD2_HUMAN ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1
HGM_OVER 198-312 -3.200 10  PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;
NEW_HUMAN_DOMAINS 221-434 -4.870 9  tr|F8W780|F8W780_HUMAN Uncharacterized protein OS=Homo sapiens GN=NAV1 PE=4 SV=1
PDB1018 26-490 -110.000 24  2z4r_A mol:protein length:440 Chromosomal replication initiator protein dnaA
PfamA32U 24-87 -17.300 27  PF11638.8; DNAA_LAWIP/5-67; DnaA N-terminal domain
149-373 -91.300 37  PF00308.18; DNAA_STRCO/317-535; Bacterial dnaA protein
185-474 -9.560 13  PF03969.16; ZAPE_ECOLI/4-371; AFG1-like ATPase
399-467 -35.200 55  PF08299.11; D9QS97_ACEAZ/358-426; Bacterial dnaA protein helix-turn-helix
SCOP207 147-368 -85.400 29  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
397-490 -41.800 61  d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
VFDB 22-490 -117.000 32  [L] COG0593 ATPase involved in DNA replication initiation
9 ACL93476.1 206 COG1018 6-206 -80.400 47  [L] COG3145 Alkylated DNA repair protein
CSGID 87-202 -8.350 14  IDP91768 gene: ycfD; conserved protein [Escherichia coli str. K-12 substr. MG1655] b1128 [Escherichia coli str. K-12 substr. MG1655]
H.sapiens 4-206 -70.000 25  sp|Q13686|ALKB1_HUMAN Alkylated DNA repair protein alkB homolog 1 OS=Homo sapiens GN=ALKBH1 PE=1 SV=2
HGM_OVER 110-206 -4.800 15  PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;
NEW_HUMAN_DOMAINS 108-203 -7.380 17  sp|Q9P015|RM15_HUMAN 39S ribosomal protein L15, mitochondrial OS=Homo sapiens GN=MRPL15 PE=1 SV=1
PDB1018 3-206 -77.700 38  3khb_A mol:protein length:219 Alpha-ketoglutarate-dependent dioxygenase alkB
PfamA32U 11-201 -67.200 26  PF13532.6; D0N998_PHYIT/73-283; 2OG-Fe(II) oxygenase superfamily
SCOP207 8-205 -75.500 39  d4jhta_ b.82.2.10 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
VFDB 6-206 -80.400 47  [L] COG3145 Alkylated DNA repair protein
10 ACL93477.1 631 COG1018 1-630 -161.000 59  [O] COG0443 Molecular chaperone
CSGID 1-630 -168.000 65  IDP02646 gene: dnaK; chaperone protein dnak [Coxiella burnetii RSA 493] CBU_1290 [Coxiella burnetii RSA 493]
H.sapiens 3-500 -126.000 31  sp|Q0VDF9|HSP7E_HUMAN Heat shock 70 kDa protein 14 OS=Homo sapiens GN=HSPA14 PE=1 SV=1
250-549 -91.900 67  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2
292-581 -81.500 52  sp|P11021|GRP78_HUMAN(removed signalp:1-18) 78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2
400-625 -63.500 52  sp|P38646|GRP75_HUMAN Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2
HGM_OVER 115-490 -7.470 11  PB162065 _Gut.Meta.Jp.0089312_ gi|162832207|dbj|BABA01012502.1||1 (- 0:1326~0 complete)
NEW_HUMAN_DOMAINS 377-497 -8.750 19  sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2
PDB1018 1-600 -164.000 66  5nro_A mol:protein length:611 Chaperone protein DnaK
PfamA32U 4-599 -162.000 65  PF00012.20; HSP7E_DROME/54-653; Hsp70 protein
SCOP207 3-184 -80.300 58  d3i33a1 c.55.1.1 (A:6-189) automated matches {Human (Homo sapiens) [TaxId: 9606]}
183-377 -74.200 50  d3i33a2 c.55.1.1 (A:190-384) automated matches {Human (Homo sapiens) [TaxId: 9606]}
384-501 -59.600 72  d4f01a1 b.130.1.1 (A:389-506) automated matches {Escherichia coli K-12 [TaxId: 83333]}
502-613 -27.200 25  d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
VFDB 1-630 -161.000 59  [O] COG0443 Molecular chaperone
11 ACL93478.1 385 COG1018 2-380 -120.000 44  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
CSGID 2-384 -124.000 51  IDP01404 dnaJ protein VC0856 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 2-372 -101.000 31  sp|Q9UBS4|DJB11_HUMAN(removed signalp:1-22) DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1
HGM_OVER 148-226 -5.190 16  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 119-204 -7.300 16  sp|Q6ZRI0|OTOG_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3
PDB1018 1-370 -93.000 34  3lz8_A mol:protein length:329 Putative chaperone DnaJ
PfamA32U 3-65 -38.600 54  PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
26-205 -10.200 12  PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)
121-342 -74.600 32  PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
SCOP207 2-78 -43.500 36  d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}
2-110 -34.800 18  d1gh6a1 a.2.3.1 (A:7-117) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
135-213 -36.100 55  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
184-258 -22.900 24  d2q2ga1 b.4.1.0 (A:4-86) automated matches {Cryptosporidium parvum [TaxId: 353152]}
259-359 -27.700 23  d3agxa2 b.4.1.0 (A:246-340) automated matches {Human (Homo sapiens) [TaxId: 9606]}
VFDB 2-380 -120.000 44  [O] COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain
12 ACL93479.1 903 COG1018 15-901 -209.000 34  [L] COG0249 Mismatch repair ATPase (MutS family)
CSGID 641-843 -9.420 15  IDP01664 gene: flhF; flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0064c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 16-195 -45.900 27  sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2
147-430 -46.200 16  sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1
210-501 -47.000 18  sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4
285-584 -54.600 20  sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1
347-659 -56.800 16  sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4
435-736 -79.700 29  sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1
502-811 -94.000 33  sp|P20585|MSH3_HUMAN DNA mismatch repair protein Msh3 OS=Homo sapiens GN=MSH3 PE=1 SV=4
585-886 -93.100 34  sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 OS=Homo sapiens GN=MSH2 PE=1 SV=1
HGM_OVER 528-741 -2.950 9  HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 650-781 -6.660 12  tr|A6NMH3|A6NMH3_HUMAN Uncharacterized protein OS=Homo sapiens GN=TNNI3K PE=4 SV=1
PDB1018 4-903 -187.000 23  2o8b_A mol:protein length:934 DNA mismatch repair protein Msh2
9-847 -207.000 37  5yk4_A mol:protein length:819 DNA mismatch repair protein MutS
PfamA32U 19-136 -64.900 67  PF01624.20; MUTS_AGRFC/20-137; MutS domain I
144-272 -30.600 23  PF05188.17; MUTS_SYNY3/150-289; MutS domain II
288-593 -74.000 28  PF05192.18; R5BPR4_9FIRM/270-560; MutS domain III
651-838 -90.400 56  PF00488.21; MUTS_SALTY/612-799; MutS domain V
SCOP207 10-129 -60.400 51  d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}
130-285 -35.800 23  d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]}
286-600 -72.500 29  d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}
601-841 -96.200 50  d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}
VFDB 15-901 -209.000 34  [L] COG0249 Mismatch repair ATPase (MutS family)
13 ACL93480.1 940 COG1018 10-922 -209.000 27  [O] COG2844 UTP:GlnB (protein PII) uridylyltransferase
CSGID 4-773 -27.600 11  IDP01050 gene: glnE; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase STM3201 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 100-671 -9.160 13  sp|Q96Q11|TRNT1_HUMAN tRNA-nucleotidyltransferase 1, mitochondrial OS=Homo sapiens GN=TRNT1 PE=1 SV=2
HGM_OVER 492-704 -6.910 12  PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)
NEW_HUMAN_DOMAINS 477-620 -6.820 10  sp|Q52LD8|RFTN2_HUMAN Raftlin-2 OS=Homo sapiens GN=RFTN2 PE=1 SV=3
PDB1018 4-352 -25.200 15  1v4a_A mol:protein length:440 Glutamate-ammonia-ligase adenylyltransferase
11-936 -11.900 13  5zz8_t mol:protein length:3122 UL36
101-632 -31.100 20  3wfo_A mol:protein length:525 Poly A polymerase
466-685 -17.300 11  5dqv_A mol:protein length:211 Uncharacterized protein
731-919 -18.800 12  1u8s_A mol:protein length:192 glycine cleavage system transcriptional repressor, putative
PfamA32U 4-198 -15.700 17  PF03710.15; GLNE_ECOLI/29-277; Glutamate-ammonia ligase adenylyltransferase
210-350 -62.200 37  PF08335.11; A1K6S3_AZOSB/170-310; GlnD PII-uridylyltransferase
494-634 -12.400 14  PF18019.1; E1VHP9_9GAMM/11-227; HD domain
848-919 -10.100 19  PF13740.6; D3RP38_ALLVD/3-79; ACT domain
SCOP207 4-207 -15.000 17  d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
236-350 -15.500 14  d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
391-639 -17.500 15  d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}
466-685 -17.800 11  d5dqva_ a.211.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}
844-935 -10.600 15  d1u8sa1 d.58.18.5 (A:4-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
VFDB 10-922 -209.000 27  [O] COG2844 UTP:GlnB (protein PII) uridylyltransferase
14 ACL93481.1 158 COG1018 1-156 -98.700 60  [H] COG0315 Molybdenum cofactor biosynthesis enzyme
CSGID 1-157 -98.600 53  IDP02834 gene: moaC; molybdenum cofactor biosynthesis protein C [Bacillus anthracis str. `Ames Ancestor`] GBAA4975 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 2-155 -93.900 49  sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3
HGM_OVER 1-148 -4.050 11  PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;
NEW_HUMAN_DOMAINS 69-148 -6.390 11  sp|Q5T699|CF183_HUMAN Putative uncharacterized protein C6orf183 OS=Homo sapiens GN=C6orf183 PE=5 SV=2
PDB1018 2-157 -98.900 51  4fdf_A mol:protein length:175 Molybdenum cofactor biosynthesis protein C 2
PfamA32U 15-148 -80.900 51  PF01967.21; B0CRH2_LACBS/355-512; MoaC family
SCOP207 12-155 -92.000 59  d3jqka_ d.58.21.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
VFDB 1-156 -98.700 60  [H] COG0315 Molybdenum cofactor biosynthesis enzyme
15 ACL93482.1 183 COG1018 18-172 -58.700 21  [H] COG0521 Molybdopterin biosynthesis enzymes
CSGID 17-179 -58.300 23  IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]
H.sapiens 6-183 -56.500 25  sp|Q9NQX3|GEPH_HUMAN Gephyrin OS=Homo sapiens GN=GPHN PE=1 SV=1
HGM_OVER 57-148 -3.530 7  HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;
NEW_HUMAN_DOMAINS 58-107 -4.460 4  sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3
PDB1018 11-179 -66.700 41  1mkz_A mol:protein length:172 Molybdenum cofactor biosynthesis protein B
PfamA32U 24-166 -25.000 25  PF00994.24; CINAL_DESPS/4-169; Probable molybdopterin binding domain
SCOP207 12-179 -68.000 41  d1mkza1 c.57.1.1 (A:3-170) MoaB {Escherichia coli [TaxId: 562]}
VFDB 18-172 -58.700 21  [H] COG0521 Molybdopterin biosynthesis enzymes
16 ACL93483.1 150 COG1018 1-146 -76.600 44  [H] COG0314 Molybdopterin converting factor, large subunit
CSGID 29-106 -5.660 18  IDP00449 gene: yplA; phospholipase A YPO2706 [Yersinia pestis CO92]
H.sapiens 2-144 -71.600 23  sp|O96007|MOC2B_HUMAN Molybdopterin synthase catalytic subunit OS=Homo sapiens GN=MOCS2 PE=1 SV=1
HGM_OVER 27-132 -5.230 15  PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
NEW_HUMAN_DOMAINS 36-134 -6.110 8  sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3
PDB1018 2-147 -76.700 24  2q5w_E mol:protein length:149 Molybdopterin-converting factor subunit 2
PfamA32U 5-117 -55.200 28  PF02391.17; K3WEI0_PYTUL/34-147; MoaE protein
SCOP207 1-146 -77.200 45  d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE {Escherichia coli [TaxId: 562]}
VFDB 1-146 -76.600 44  [H] COG0314 Molybdopterin converting factor, large subunit
17 ACL93484.1 79 COG1018 1-79 -27.300 26  [H] COG1977 Molybdopterin converting factor, small subunit
CSGID 1-79 -56.600 30  IDP04099 molybdenum cofactor biosynthesis protein D [Vibrio cholerae O1 biovar El Tor str. N16961] VC1027 [Vibrio cholerae O1 biovar El Tor str. N16961]
H.sapiens 2-79 -45.300 26  sp|O96033|MOC2A_HUMAN Molybdopterin synthase sulfur carrier subunit OS=Homo sapiens GN=MOCS2 PE=1 SV=1
HGM_OVER 2-77 -3.330 10  PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]
NEW_HUMAN_DOMAINS 27-73 -6.400 14  sp|Q9H0K6|PUS7L_HUMAN Pseudouridylate synthase 7 homolog-like protein OS=Homo sapiens GN=PUS7L PE=1 SV=1
PDB1018 1-79 -56.300 30  1nvi_D mol:protein length:81 Molybdopterin converting factor subunit 1
PfamA32U 2-79 -27.300 14  PF14451.6; Q63PX0_BURPS/1-81; Mut7-C ubiquitin
SCOP207 1-79 -56.200 30  d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}
VFDB 1-79 -27.300 26  [H] COG1977 Molybdopterin converting factor, small subunit
18 ACL93485.1 349 COG1018 9-349 -115.000 66  [H] COG2896 Molybdenum cofactor biosynthesis enzyme
CSGID 19-349 -107.000 29  IDP02218 gene: narA-1; molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. `Ames Ancestor`] GBAA2133 [Bacillus anthracis str. `Ames Ancestor`]
H.sapiens 2-263 -82.200 32  sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3
115-349 -78.600 30  sp|Q9NZB8|MOCS1_HUMAN Molybdenum cofactor biosynthesis protein 1 OS=Homo sapiens GN=MOCS1 PE=1 SV=3
HGM_OVER 18-124 -2.880 11  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
NEW_HUMAN_DOMAINS 268-322 -5.010 18  sp|Q6IQ32|ADNP2_HUMAN ADNP homeobox protein 2 OS=Homo sapiens GN=ADNP2 PE=2 SV=1
PDB1018 19-349 -106.000 32  1tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A
PfamA32U 36-197 -13.700 14  PF04055.21; CDKAL_HUMAN/208-381; Radical SAM superfamily
39-150 -19.700 15  PF13394.6; B8DWG8_BIFA0/78-188; 4Fe-4S single cluster domain
204-331 -45.700 38  PF06463.13; MOAA_PSESM/185-315; Molybdenum Cofactor Synthesis C
SCOP207 21-342 -104.000 32  d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
VFDB 9-349 -115.000 66  [H] COG2896 Molybdenum cofactor biosynthesis enzyme
19 ACL93486.1 210 COG1018 1-209 -74.800 31  [R] COG2068 Uncharacterized MobA-related protein
CSGID 2-209 -30.300 18  IDP02032 gene: mobA; molybdopterin-guanine dinucleotide biosynthesis protein A [Yersinia pestis CO92] YPO0013 [Yersinia pestis CO92]
H.sapiens 2-209 -20.500 16  sp|A4D126|ISPD_HUMAN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase-like protein OS=Homo sapiens GN=ISPD PE=3 SV=2
HGM_OVER 110-209 -3.040 18  PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;
NEW_HUMAN_DOMAINS 88-154 -4.460 10  sp|A0AVI2|FR1L5_HUMAN Fer-1-like protein 5 OS=Homo sapiens GN=FER1L5 PE=2 SV=2
PDB1018 5-209 -77.200 27  2we9_A mol:protein length:197 MOBA-RELATED PROTEIN
PfamA32U 9-206 -16.700 11  PF01983.16; COFC_ARCFU/1-205; Guanylyl transferase CofC like
11-175 -28.400 21  PF12804.7; Q5FTR9_GLUOX/6-165; MobA-like NTP transferase domain
SCOP207 1-197 -32.100 17  d2e8ba_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Aquifex aeolicus [TaxId: 224324]}
VFDB 1-209 -74.800 31  [R] COG2068 Uncharacterized MobA-related protein
20 ACL93487.1 74 COG1018 15-65 -6.800 21  [G] COG4806 L-rhamnose isomerase
CSGID 14-74 -5.600 18  IDP90982 gene: cybC; cytochrome b(562) [Yersinia pestis KIM 10] y0869 [Yersinia pestis KIM10+]
H.sapiens 11-68 -8.130 13  sp|Q96NT5|PCFT_HUMAN Proton-coupled folate transporter OS=Homo sapiens GN=SLC46A1 PE=1 SV=1
HGM_OVER 35-69 -4.430 11  HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;
NEW_HUMAN_DOMAINS 14-62 -5.440 14  sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2
PDB1018 18-74 -6.960 15  5t2a_k mol:protein length:105 eL36
PfamA32U 15-65 -7.150 15  PF06134.11; RHAA_BACHD/1-417; L-rhamnose isomerase (RhaA)
SCOP207 8-65 -6.690 22  d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]}
VFDB 15-65 -6.800 21  [G] COG4806 L-rhamnose isomerase

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]