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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3877next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 ACL93468.1 301 CSGID 170-292 -6.970 13  IDP02625 gene: aroK; shikimate kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4457 [Bacillus anthracis str. `Ames Ancestor`]
2 ACL93469.1 199 CSGID 1-199 -87.100 28  IDP91354 gene: maf; Maf-like protein [Vibrio vulnificus CMCP6] VV1_3015 [Vibrio vulnificus CMCP6]
3 ACL93470.1 285 CSGID 5-285 -92.900 34  IDP90792 gene: aroE; shikimate 5-dehydrogenase [Vibrio cholerae O1 biovar eltor str. N16961] VC0056 [Vibrio cholerae O1 biovar El Tor str. N16961]
4 ACL93471.1 199 CSGID 1-197 -88.200 35  IDP02800 gene: coaE; dephospho-CoA kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4828 [Bacillus anthracis str. `Ames Ancestor`]
5 ACL93472.1 237 CSGID 2-164 -8.140 12  IDP01091 gene: serB; phosphoserine phosphatase STM4578 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
6 ACL93473.1 262 CSGID 1-261 -98.500 39  IDP02329 enoyl-CoA hydratase [Bacillus anthracis str. `Ames Ancestor`] GBAA2551 [Bacillus anthracis str. `Ames Ancestor`]
7 ACL93474.1 96 CSGID 6-91 -50.900 40  IDP90576 gene: rpsT; 30S ribosomal protein S20 [Vibrio cholerae O1 biovar eltor str. N16961] VC0679 [Vibrio cholerae O1 biovar El Tor str. N16961]
8 ACL93475.1 490 CSGID 20-489 -117.000 32  IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]
9 ACL93476.1 206 CSGID 87-202 -8.350 14  IDP91768 gene: ycfD; conserved protein [Escherichia coli str. K-12 substr. MG1655] b1128 [Escherichia coli str. K-12 substr. MG1655]
10 ACL93477.1 631 CSGID 1-630 -168.000 65  IDP02646 gene: dnaK; chaperone protein dnak [Coxiella burnetii RSA 493] CBU_1290 [Coxiella burnetii RSA 493]
11 ACL93478.1 385 CSGID 2-384 -124.000 51  IDP01404 dnaJ protein VC0856 [Vibrio cholerae O1 biovar El Tor str. N16961]
12 ACL93479.1 903 CSGID 641-843 -9.420 15  IDP01664 gene: flhF; flagellar biosynthesis regulator FlhF [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0064c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
13 ACL93480.1 940 CSGID 4-773 -27.600 11  IDP01050 gene: glnE; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase STM3201 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
14 ACL93481.1 158 CSGID 1-157 -98.600 53  IDP02834 gene: moaC; molybdenum cofactor biosynthesis protein C [Bacillus anthracis str. `Ames Ancestor`] GBAA4975 [Bacillus anthracis str. `Ames Ancestor`]
15 ACL93482.1 183 CSGID 17-179 -58.300 23  IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]
16 ACL93483.1 150 CSGID 29-106 -5.660 18  IDP00449 gene: yplA; phospholipase A YPO2706 [Yersinia pestis CO92]
17 ACL93484.1 79 CSGID 1-79 -56.600 30  IDP04099 molybdenum cofactor biosynthesis protein D [Vibrio cholerae O1 biovar El Tor str. N16961] VC1027 [Vibrio cholerae O1 biovar El Tor str. N16961]
18 ACL93485.1 349 CSGID 19-349 -107.000 29  IDP02218 gene: narA-1; molybdenum cofactor biosynthesis protein A [Bacillus anthracis str. `Ames Ancestor`] GBAA2133 [Bacillus anthracis str. `Ames Ancestor`]
19 ACL93486.1 210 CSGID 2-209 -30.300 18  IDP02032 gene: mobA; molybdopterin-guanine dinucleotide biosynthesis protein A [Yersinia pestis CO92] YPO0013 [Yersinia pestis CO92]
20 ACL93487.1 74 CSGID 14-74 -5.600 18  IDP90982 gene: cybC; cytochrome b(562) [Yersinia pestis KIM 10] y0869 [Yersinia pestis KIM10+]

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Q, Zmasek CM, Dishaw LJ, Mueller MG, Ye Y, Litman GW, Godzik A. Novel genes dramatically alter regulatory network topology in amphioxus. Genome Biol.2008 Aug 4;9(8):R123.