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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:
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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 3877next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 ACL93468.1 301 SCOP207 171-291 -10.600 16  d3kb2a1 c.37.1.1 (A:2-165) automated matches {Bacillus subtilis [TaxId: 1423]}
2 ACL93469.1 199 SCOP207 1-196 -84.800 26  d4oo0a_ c.51.4.0 (A:) automated matches {Burkholderia cenocepacia [TaxId: 216591]}
3 ACL93470.1 285 SCOP207 1-109 -54.300 36  d3tnla1 c.58.1.0 (A:4-112) automated matches {Listeria monocytogenes [TaxId: 169963]}
110-283 -62.500 30  d2egga2 c.2.1.7 (A:123-297) Shikimate 5-dehydrogenase AroE {Geobacillus kaustophilus [TaxId: 1462]}
4 ACL93471.1 199 SCOP207 1-199 -85.400 27  d4ttra_ c.37.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}
5 ACL93472.1 237 SCOP207 3-169 -86.400 46  d1j54a_ c.55.3.5 (A:) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
6 ACL93473.1 262 SCOP207 2-261 -101.000 55  d3moya_ c.14.1.0 (A:) automated matches {Mycobacterium smegmatis [TaxId: 246196]}
7 ACL93474.1 96 SCOP207 8-96 -48.500 27  d1fjgt_ a.7.6.1 (T:) Ribosomal protein S20 {Thermus thermophilus [TaxId: 274]}
8 ACL93475.1 490 SCOP207 147-368 -85.400 29  d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
397-490 -41.800 61  d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
9 ACL93476.1 206 SCOP207 8-205 -75.500 39  d4jhta_ b.82.2.10 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}
10 ACL93477.1 631 SCOP207 3-184 -80.300 58  d3i33a1 c.55.1.1 (A:6-189) automated matches {Human (Homo sapiens) [TaxId: 9606]}
183-377 -74.200 50  d3i33a2 c.55.1.1 (A:190-384) automated matches {Human (Homo sapiens) [TaxId: 9606]}
384-501 -59.600 72  d4f01a1 b.130.1.1 (A:389-506) automated matches {Escherichia coli K-12 [TaxId: 83333]}
502-613 -27.200 25  d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
11 ACL93478.1 385 SCOP207 2-78 -43.500 36  d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}
2-110 -34.800 18  d1gh6a1 a.2.3.1 (A:7-117) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
135-213 -36.100 55  d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
184-258 -22.900 24  d2q2ga1 b.4.1.0 (A:4-86) automated matches {Cryptosporidium parvum [TaxId: 353152]}
259-359 -27.700 23  d3agxa2 b.4.1.0 (A:246-340) automated matches {Human (Homo sapiens) [TaxId: 9606]}
12 ACL93479.1 903 SCOP207 10-129 -60.400 51  d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}
130-285 -35.800 23  d1wb9a3 c.55.6.1 (A:117-269) DNA repair protein MutS, domain II {Escherichia coli [TaxId: 562]}
286-600 -72.500 29  d1wb9a1 a.113.1.1 (A:270-566) DNA repair protein MutS, domain III {Escherichia coli [TaxId: 562]}
601-841 -96.200 50  d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}
13 ACL93480.1 940 SCOP207 4-207 -15.000 17  d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
236-350 -15.500 14  d1v4aa1 a.24.16.4 (A:287-437) Glutamine synthase adenylyltransferase GlnE, domain 2 {Escherichia coli [TaxId: 562]}
391-639 -17.500 15  d1vfga1 a.173.1.1 (A:137-351) Poly A polymerase PcnB {Aquifex aeolicus [TaxId: 63363]}
466-685 -17.800 11  d5dqva_ a.211.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}
844-935 -10.600 15  d1u8sa1 d.58.18.5 (A:4-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
14 ACL93481.1 158 SCOP207 12-155 -92.000 59  d3jqka_ d.58.21.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}
15 ACL93482.1 183 SCOP207 12-179 -68.000 41  d1mkza1 c.57.1.1 (A:3-170) MoaB {Escherichia coli [TaxId: 562]}
16 ACL93483.1 150 SCOP207 1-146 -77.200 45  d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE {Escherichia coli [TaxId: 562]}
17 ACL93484.1 79 SCOP207 1-79 -56.200 30  d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}
18 ACL93485.1 349 SCOP207 21-342 -104.000 32  d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
19 ACL93486.1 210 SCOP207 1-197 -32.100 17  d2e8ba_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Aquifex aeolicus [TaxId: 224324]}
20 ACL93487.1 74 SCOP207 8-65 -6.690 22  d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]}

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.