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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX] 591 COG1018 1-591 -5.890 13  [O] COG2844 UTP:GlnB (protein PII) uridylyltransferase
CSGID 30-566 -6.360 12  IDP02820 hypothetical protein lmo2196 [Listeria monocytogenes EGD-e] lmo2196 [Listeria monocytogenes EGD-e]
H.sapiens 104-152 -7.830 34  sp|Q6PDA7|SG11A_HUMAN(removed signalp:1-25) Sperm-associated antigen 11A OS=Homo sapiens GN=SPAG11A PE=2 SV=3
HGM_OVER 299-381 -4.320 17  HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;
NEW_HUMAN_DOMAINS 271-348 -5.650 16  sp|Q8NCX0|CC150_HUMAN Coiled-coil domain-containing protein 150 OS=Homo sapiens GN=CCDC150 PE=2 SV=2
PDB1018 299-398 -6.940 13  3lmf_A mol:protein length:121 Uncharacterized protein
PfamA32U 496-565 -6.400 13  PF07495.13; Q8A3X8_BACTN/687-750; Y_Y_Y domain
SCOP207 356-412 -6.070 17  d1rewc_ g.7.1.3 (C:) BMP receptor Ia ectodomain {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-591 -5.890 13  [O] COG2844 UTP:GlnB (protein PII) uridylyltransferase
2 gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX] 90 COG1018 3-72 -42.500 25  [S] COG2155 Uncharacterized conserved protein
CSGID 12-60 -9.350 13  IDP06445 gene: H3L; H3L [Monkeypox virus Zaire-96-I-16] NP_536520 [Monkeypox virus Zaire-96-I-16]
H.sapiens 36-90 -12.500 18  sp|Q8IV31|TM139_HUMAN(removed signalp:1-25) Transmembrane protein 139 OS=Homo sapiens GN=TMEM139 PE=2 SV=1
HGM_OVER 22-78 -3.940 13  HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;
NEW_HUMAN_DOMAINS 4-88 -6.350 12  sp|C9JH25|PRRT4_HUMAN Proline-rich transmembrane protein 4 OS=Homo sapiens GN=PRRT4 PE=2 SV=1
PDB1018 4-90 -7.820 8  1kqf_C mol:protein length:217 FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, CYTOCHROME B556(FDN) SUBUNIT
PfamA32U 4-63 -36.700 20  PF04070.12; R5JWM3_9CLOT/4-61; Domain of unknown function (DUF378 topsan)
SCOP207 4-90 -7.770 8  d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
VFDB 3-72 -42.500 25  [S] COG2155 Uncharacterized conserved protein
3 gi|15604720|ref|NP_219504.1| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX] 100 COG1018 3-100 -51.600 21  [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
CSGID 4-100 -49.700 17  IDP06269 gene: gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C [Streptococcus pneumoniae TIGR4] NP_344960 [Streptococcus pneumoniae TIGR4]
H.sapiens 1-98 -40.900 18  sp|O43716|GATCL_HUMAN GatC-like protein OS=Homo sapiens GN=GATC PE=1 SV=1
HGM_OVER 1-39 -3.030 12  PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;
NEW_HUMAN_DOMAINS 1-55 -5.750 12  sp|Q9NZJ4|SACS_HUMAN Sacsin OS=Homo sapiens GN=SACS PE=1 SV=2
PDB1018 2-100 -51.000 24  4wj3_C mol:protein length:104 Glutamyl-tRNA(Gln) amidotransferase subunit C
PfamA32U 23-95 -34.900 15  PF02686.15; F0SQ10_RUBBR/21-91; Glu-tRNAGln amidotransferase C subunit
SCOP207 5-98 -48.400 27  d3ip4c_ a.137.12.1 (C:) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 158878]}
VFDB 3-100 -51.600 21  [J] COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit
4 gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX] 491 COG1018 1-482 -137.000 42  [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
CSGID 18-473 -131.000 40  IDP90744 gene: gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1059c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
H.sapiens 1-482 -132.000 39  sp|Q9H0R6|QRSL1_HUMAN Glutamyl-tRNA(Gln) amidotransferase subunit A homolog OS=Homo sapiens GN=QRSL1 PE=1 SV=2
HGM_OVER 25-121 -2.240 9  HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 5-116 -4.790 7  tr|E7ENB9|E7ENB9_HUMAN Uncharacterized protein OS=Homo sapiens PE=4 SV=1
PDB1018 1-481 -138.000 44  2df4_A mol:protein length:485 Glutamyl-tRNA(Gln) amidotransferase subunit A
PfamA32U 22-462 -65.000 21  PF01425.21; AMDS_ASPOR/74-533; Amidase
SCOP207 1-485 -129.000 42  d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}
VFDB 1-482 -137.000 42  [J] COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases
5 gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX] 488 COG1018 1-488 -149.000 38  [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)
CSGID 7-488 -147.000 40  IDP06264 gene: gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B [Streptococcus pneumoniae TIGR4] NP_344958 [Streptococcus pneumoniae TIGR4]
H.sapiens 1-486 -142.000 30  sp|O75879|GATB_HUMAN Probable glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Homo sapiens GN=PET112L PE=1 SV=1
HGM_OVER 166-292 -2.340 15  PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;
NEW_HUMAN_DOMAINS 12-155 -6.510 12  sp|Q9UKN5|PRDM4_HUMAN PR domain zinc finger protein 4 OS=Homo sapiens GN=PRDM4 PE=1 SV=3
PDB1018 7-487 -149.000 41  2df4_B mol:protein length:483 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
PfamA32U 10-297 -122.000 42  PF02934.15; Q11V48_CYTH3/11-295; GatB/GatE catalytic domain
336-485 -50.100 40  PF02637.18; GATB_GEOKA/326-473; GatB domain
SCOP207 9-304 -126.000 48  d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
305-424 -37.200 21  d2f2ab1 a.182.1.2 (B:294-411) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
VFDB 1-488 -149.000 38  [J] COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog)
6 gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX] 363 COG1018 18-362 -8.560 12  [P] KOG4390 Voltage-gated A-type K+ channel KCND
CSGID 154-363 -10.300 6  IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]
H.sapiens 21-320 -9.360 12  sp|Q01118|SCN7A_HUMAN Sodium channel protein type 7 subunit alpha OS=Homo sapiens GN=SCN7A PE=2 SV=2
HGM_OVER 44-164 -5.790 15  PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF
NEW_HUMAN_DOMAINS 41-151 -6.280 9  tr|B7Z676|B7Z676_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC9B2 PE=2 SV=1
PDB1018 34-353 -11.600 9  6d4h_A mol:protein length:1455 Protein patched homolog 1
PfamA32U 16-363 -76.800 100  PF17461.2; Y005_CHLTR/16-363; Family of unknown function (DUF5423 topsan)
SCOP207 11-145 -6.160 12  d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
VFDB 18-362 -8.560 12  [P] KOG4390 Voltage-gated A-type K+ channel KCND
7 gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX] 189 COG1018 36-166 -6.840 9  [U] KOG1725 Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family)
CSGID 15-135 -7.840 15  IDP91372 hypothetical protein VV1_2222 [Vibrio vulnificus CMCP6] VV1_2222 [Vibrio vulnificus CMCP6]
H.sapiens 93-185 -9.790 20  sp|Q32MH5|K1370_HUMAN Uncharacterized protein KIAA1370 OS=Homo sapiens GN=KIAA1370 PE=2 SV=2
HGM_OVER 87-157 -5.350 8  PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]
NEW_HUMAN_DOMAINS 91-185 -9.310 18  sp|Q32MH5|K1370_HUMAN Uncharacterized protein KIAA1370 OS=Homo sapiens GN=KIAA1370 PE=2 SV=2
PDB1018 100-189 -7.040 14  1bui_C mol:protein length:128 Staphylokinase
PfamA32U 5-157 -105.000 100  PF17459.2; Y006_CHLTR/5-157; Family of unknown function (DUF5422 topsan)
SCOP207 100-189 -7.170 14  d2saka_ d.15.5.1 (A:) Staphylokinase {Staphylococcus aureus [TaxId: 1280]}
VFDB 36-166 -6.840 9  [U] KOG1725 Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family)
8 gi|15604725|ref|NP_219509.1| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX] 316 COG1018 1-316 -16.900 7  [M] COG4571 Outer membrane protease
CSGID 1-316 -16.900 8  IDP02013 gene: pgtE; outer membrane protease [Salmonella typhimurium LT2] STM2395 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 12-268 -6.410 10  sp|Q9Y277|VDAC3_HUMAN Voltage-dependent anion-selective channel protein 3 OS=Homo sapiens GN=VDAC3 PE=1 SV=1
HGM_OVER 1-199 -10.700 10  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
NEW_HUMAN_DOMAINS 195-316 -4.900 5  sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1
PDB1018 1-316 -14.500 9  4rl9_A mol:protein length:255 Carbapenem-associated resistance protein
36-316 -20.900 8  2f1c_X mol:protein length:286 Outer membrane protein G
PfamA32U 1-242 -15.800 10  PF06316.11; Q9LA63_9CAUD/1-199; Enterobacterial Ail/Lom protein
42-314 -21.800 9  PF09381.10; D1AL54_SEBTE/71-353; Outer membrane protein G (OmpG)
SCOP207 39-316 -16.500 8  d2vdfa_ f.4.4.2 (A:) Outer membrane adhesin/invasin OpcA {Neisseria meningitidis [TaxId: 487]}
VFDB 1-316 -16.900 7  [M] COG4571 Outer membrane protease
9 gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX] 300 COG1018 4-299 -92.500 23  [L] COG1039 Ribonuclease HIII
CSGID 50-239 -6.800 12  IDP04065 gene: yyaC; putative sporulation protein YyaC [Clostridium perfringens ATCC 13124] CPF_2985 [Clostridium perfringens ATCC 13124]
H.sapiens 62-300 -57.900 18  sp|O75792|RNH2A_HUMAN Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2
HGM_OVER 92-156 -3.540 18  HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;
NEW_HUMAN_DOMAINS 92-195 -5.870 7  sp|Q8N7U6|EFHB_HUMAN EF-hand domain-containing family member B OS=Homo sapiens GN=EFHB PE=2 SV=4
PDB1018 2-300 -96.200 26  2d0a_A mol:protein length:310 ribonuclease HIII
PfamA32U 4-79 -20.900 16  PF11858.8; RNH3_OCEIH/3-77; Domain of unknown function (DUF3378 topsan)
89-291 -62.600 17  PF01351.18; RNH2A_SCHPO/66-277; Ribonuclease HII
SCOP207 88-300 -68.800 21  d1ekea_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Methanococcus jannaschii [TaxId: 2190]}
VFDB 4-299 -92.500 23  [L] COG1039 Ribonuclease HIII
10 gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX] 143 COG1018 1-109 -48.200 25  [S] COG1426 Uncharacterized protein conserved in bacteria
CSGID 2-112 -37.100 16  IDP06200 hypothetical protein HP0554 [Helicobacter pylori 26695] NP_207349 [Helicobacter pylori 26695]
H.sapiens 4-78 -14.300 15  sp|O60869|EDF1_HUMAN Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1
HGM_OVER 1-59 -5.700 11  PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;
NEW_HUMAN_DOMAINS 15-82 -6.180 13  tr|B1AKM8|B1AKM8_HUMAN Phosphatidylserine decarboxylase (Fragment) OS=Homo sapiens GN=PISD PE=4 SV=1
PDB1018 9-137 -51.700 19  3fym_A mol:protein length:130 Putative uncharacterized protein
PfamA32U 13-83 -37.100 25  PF12844.7; Q03EQ2_PEDPA/10-80; Helix-turn-helix domain
SCOP207 10-85 -15.000 18  d3f52a_ a.35.1.0 (A:) automated matches {Corynebacterium glutamicum [TaxId: 1718]}
VFDB 1-109 -48.200 25  [S] COG1426 Uncharacterized protein conserved in bacteria
11 gi|15604728|ref|NP_219512.1| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX] 455 COG1018 2-330 -87.300 19  [M] COG1560 Lauroyl/myristoyl acyltransferase
CSGID 13-345 -90.600 18  IDP95269 lipid A biosynthesis lauroyl acyltransferase [Acinetobacter baumannii ATCC 17978] YP_001085628 [Acinetobacter baumannii ATCC 17978]
28-326 -91.300 19  IDP95262 lipid A biosynthesis lauroyl acyltransferase [Acinetobacter baumannii ATCC 17978] YP_001083488 [Acinetobacter baumannii ATCC 17978]
H.sapiens 1-455 -10.000 9  sp|Q8NF37|PCAT1_HUMAN Lysophosphatidylcholine acyltransferase 1 OS=Homo sapiens GN=LPCAT1 PE=1 SV=2
125-306 -14.300 11  sp|Q99943|PLCA_HUMAN(removed signalp:1-26) 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha OS=Homo sapiens GN=AGPAT1 PE=2 SV=2
HGM_OVER 28-317 -4.440 8  PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;
NEW_HUMAN_DOMAINS 18-308 -8.960 10  sp|Q9H0V1|TM168_HUMAN Transmembrane protein 168 OS=Homo sapiens GN=TMEM168 PE=1 SV=2
PDB1018 13-345 -90.600 18  5kn7_B mol:protein length:333 Lipid A biosynthesis lauroyl acyltransferase
PfamA32U 14-316 -80.300 20  PF03279.13; LPXL_HAEIN/6-300; Bacterial lipid A biosynthesis acyltransferase
SCOP207 40-309 -13.600 8  d1iuqa1 c.112.1.1 (A:4-368) Glycerol-3-phosphate (1)-acyltransferase {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
VFDB 2-330 -87.300 19  [M] COG1560 Lauroyl/myristoyl acyltransferase
12 gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX] 418 COG1018 4-415 -57.000 11  [S] COG4856 Uncharacterized protein conserved in bacteria
CSGID 4-415 -55.200 11  IDP05762 hypothetical protein lmo2119 [Listeria monocytogenes EGD-e] lmo2119 [Listeria monocytogenes EGD-e]
H.sapiens 155-181 -7.470 7  sp|Q9NXH9|TRM1_HUMAN(removed signalp:1-21) N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Homo sapiens GN=TRMT1 PE=1 SV=1
HGM_OVER 1-172 -6.260 7  PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;
NEW_HUMAN_DOMAINS 14-178 -4.800 10  sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4
PDB1018 31-231 -34.700 8  4qdy_A mol:protein length:227 conserved hypothetical protein
PfamA32U 142-226 -18.000 13  PF07949.12; Q63H46_BACCZ/240-319; YbbR-like protein
SCOP207 66-198 -5.180 9  d4w64a1 b.157.1.0 (A:1-167) automated matches {Acinetobacter baumannii [TaxId: 480119]}
VFDB 4-415 -57.000 11  [S] COG4856 Uncharacterized protein conserved in bacteria
13 gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX] 264 COG1018 4-264 -91.400 32  [S] COG1624 Uncharacterized conserved protein
CSGID 16-264 -89.500 33  IDP06288 hypothetical protein SP_1561 [Streptococcus pneumoniae TIGR4] NP_346008 [Streptococcus pneumoniae TIGR4]
H.sapiens 140-253 -8.310 9  sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1
HGM_OVER 105-216 -5.230 8  PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;
NEW_HUMAN_DOMAINS 124-252 -6.670 8  sp|Q9P217|ZSWM5_HUMAN Zinc finger SWIM domain-containing protein 5 OS=Homo sapiens GN=ZSWIM5 PE=2 SV=2
PDB1018 44-232 -74.200 32  2fb5_A mol:protein length:205 hypothetical Membrane Spanning Protein
79-264 -72.000 34  4rv7_A mol:protein length:192 Diadenylate cyclase
PfamA32U 109-230 -63.700 39  PF02457.16; Q3A5V7_PELCD/116-235; DisA bacterial checkpoint controller nucleotide-binding
SCOP207 44-232 -73.700 32  d2fb5a1 d.320.1.1 (A:5-205) Hypothetical protein BC4920 (YojJ) {Bacillus cereus [TaxId: 1396]}
VFDB 4-264 -91.400 32  [S] COG1624 Uncharacterized conserved protein
14 gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX] 446 COG1018 1-445 -131.000 31  [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1
CSGID 380-444 -7.120 16  IDP91905 hypothetical protein SpneCM_05473 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005473 [Streptococcus pneumoniae str. Canada MDR_19A]
H.sapiens 7-445 -7.870 10  sp|Q8N370|LAT4_HUMAN(removed signalp:1-32) Large neutral amino acids transporter small subunit 4 OS=Homo sapiens GN=SLC43A2 PE=1 SV=1
HGM_OVER 219-435 -3.670 10  HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;
NEW_HUMAN_DOMAINS 381-444 -8.360 8  sp|P0CB33|ZN735_HUMAN Putative zinc finger protein 735 OS=Homo sapiens GN=ZNF735 PE=5 SV=1
PDB1018 1-445 -130.000 27  5doq_A mol:protein length:448 Bd-type quinol oxidase subunit I
PfamA32U 6-435 -131.000 29  PF01654.17; D7BPD8_ARCHD/6-476; Cytochrome bd terminal oxidase subunit I
SCOP207 46-268 -6.280 13  d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
VFDB 1-445 -131.000 31  [C] COG1271 Cytochrome bd-type quinol oxidase, subunit 1
15 gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX] 353 COG1018 5-353 -107.000 29  [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2
CSGID 37-66 -6.270 10  IDP01855 gene: dinI; DNA damage-inducible protein I [Salmonella typhimurium LT2] STM1162 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
H.sapiens 64-344 -8.320 8  sp|Q6NV75|GP153_HUMAN(removed signalp:1-26) Probable G-protein coupled receptor 153 OS=Homo sapiens GN=GPR153 PE=2 SV=2
HGM_OVER 23-173 -3.550 8  PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]
NEW_HUMAN_DOMAINS 2-87 -5.910 16  sp|Q99575|POP1_HUMAN Ribonucleases P/MRP protein subunit POP1 OS=Homo sapiens GN=POP1 PE=1 SV=2
PDB1018 7-351 -92.800 17  5doq_B mol:protein length:342 Bd-type quinol oxidase subunit II
PfamA32U 9-343 -106.000 26  PF02322.15; C6X9F9_METGS/10-365; Cytochrome bd terminal oxidase subunit II
SCOP207 37-66 -6.550 13  d1f0aa_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
VFDB 5-353 -107.000 29  [C] COG1294 Cytochrome bd-type quinol oxidase, subunit 2
16 gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX] 434 COG1018 1-434 -93.700 28  [T] COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH
CSGID 226-434 -10.500 15  IDP05118 putative helicase [Escherichia coli O157:H7 EDL933] Z5902 [Escherichia coli O157:H7 str. EDL933]
H.sapiens 2-140 -24.800 19  sp|Q86US8|EST1A_HUMAN Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2
226-387 -16.600 19  sp|Q9BXT6|M10L1_HUMAN(removed signalp:1-18) Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
226-424 -16.300 20  sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated receptor A-interacting complex 285 kDa protein OS=Homo sapiens GN=PRIC285 PE=1 SV=6
HGM_OVER 229-406 -3.760 13  PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;
NEW_HUMAN_DOMAINS 233-271 -4.720 15  sp|Q6P2S7|GNN_HUMAN Tetratricopeptide repeat protein GNN OS=Homo sapiens GN=GNN PE=2 SV=3
PDB1018 1-140 -27.200 19  2dok_A mol:protein length:186 Telomerase-binding protein EST1A
221-434 -72.400 29  3b85_A mol:protein length:208 Phosphate starvation-inducible protein
PfamA32U 5-138 -35.900 23  PF13638.6; D2R0J2_PIRSD/11-151; PIN domain
222-434 -71.300 30  PF02562.16; A0LK93_SYNFM/124-328; PhoH-like protein
SCOP207 2-143 -12.400 19  d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeoglobus fulgidus [TaxId: 2234]}
226-407 -14.400 17  d2gk6a1 c.37.1.19 (A:295-324,A:416-702) Upf1 {Human (Homo sapiens) [TaxId: 9606]}
VFDB 1-434 -93.700 28  [T] COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH
17 gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX] 242 COG1018 171-239 -8.400 18  [S] COG5431 Uncharacterized metal-binding protein
CSGID 1-242 -126.000 100  IDP90360 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_016 [Chlamydia trachomatis D/UW-3/CX]
H.sapiens 174-240 -10.200 25  sp|Q8NEG5|ZSWM2_HUMAN E3 ubiquitin-protein ligase ZSWIM2 OS=Homo sapiens GN=ZSWIM2 PE=1 SV=2
HGM_OVER 142-239 -5.580 14  HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;
NEW_HUMAN_DOMAINS 186-240 -9.130 20  sp|Q13233|M3K1_HUMAN Mitogen-activated protein kinase kinase kinase 1 OS=Homo sapiens GN=MAP3K1 PE=1 SV=4
PDB1018 65-237 -8.780 16  1jpy_A mol:protein length:137 interleukin 17F
PfamA32U 170-241 -9.850 16  PF14216.6; A0A1X7UQX7_AMPQE/11-98; Domain of unknown function (DUF4326 topsan)
SCOP207 10-165 -7.130 9  d2acoa1 b.60.1.1 (A:11-177) automated matches {Escherichia coli [TaxId: 562]}
VFDB 171-239 -8.400 18  [S] COG5431 Uncharacterized metal-binding protein
18 gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX] 433 COG1018 22-163 -39.400 21  [S] COG3807 Uncharacterized protein conserved in bacteria
52-431 -15.000 10  [S] KOG2995 FOG: SH3 domain
CSGID 18-401 -49.700 13  IDP05719 peptidase, M23/M37 family [Bacillus anthracis str. Ames] BA_1903 [Bacillus anthracis str. Ames]
H.sapiens 20-197 -38.000 12  sp|O75592|MYCB2_HUMAN Probable E3 ubiquitin-protein ligase MYCBP2 OS=Homo sapiens GN=MYCBP2 PE=1 SV=3
25-276 -19.500 8  sp|Q5TCZ1|SPD2A_HUMAN SH3 and PX domain-containing protein 2A OS=Homo sapiens GN=SH3PXD2A PE=1 SV=1
HGM_OVER 40-157 -5.920 15  PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;
NEW_HUMAN_DOMAINS 22-104 -19.200 8  tr|F8WA13|F8WA13_HUMAN Uncharacterized protein OS=Homo sapiens GN=MYCBP2 PE=4 SV=1
PDB1018 9-315 -19.200 10  4epc_A mol:protein length:334 N-acetylmuramoyl-L-alanine amidase
11-235 -22.300 5  5jqc_A mol:protein length:259 Lmo1076 protein
33-176 -28.200 13  3pvq_A mol:protein length:308 Dipeptidyl-peptidase VI
PfamA32U 42-96 -17.100 23  PF06347.13; Q2YQQ5_BRUA2/49-105; Bacterial SH3 domain
102-159 -16.300 19  PF08239.11; E9IE92_SOLIN/305-375; Bacterial SH3 domain
SCOP207 41-160 -30.200 14  d1xova1 b.34.11.4 (A:181-314) Endolysin Ply, C-terminal domain {Bacteriophage Psa [TaxId: 171618]}
VFDB 22-163 -39.400 21  [S] COG3807 Uncharacterized protein conserved in bacteria
52-431 -15.000 10  [S] KOG2995 FOG: SH3 domain
19 gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX] 157 COG1018 17-142 -7.960 7  [R] COG0628 Predicted permease
CSGID 22-115 -7.030 11  IDP05541 gene: cobS; cobalamin synthase [Clostridium difficile 630] CD3437 [Peptoclostridium difficile 630]
H.sapiens 2-157 -9.510 9  sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR2 PE=1 SV=3
HGM_OVER 24-122 -4.040 6  HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;
NEW_HUMAN_DOMAINS 19-66 -6.650 16  tr|Q4VAR0|Q4VAR0_HUMAN CYP11B1 protein OS=Homo sapiens GN=CYP11B1 PE=2 SV=1
PDB1018 17-140 -7.830 8  4yeu_A mol:protein length:312 Cys-loop ligand-gated ion channel,Proton-gated ion channel
PfamA32U 17-119 -7.330 6  PF01594.16; Y338_HAEIN/10-332; AI-2E family transporter
SCOP207 29-119 -6.280 9  d2r40d_ a.123.1.1 (D:) Ecdysone receptor {Tobacco budworm (Heliothis virescens) [TaxId: 7102]}
VFDB 17-142 -7.960 7  [R] COG0628 Predicted permease
20 gi|15604737|ref|NP_219521.1| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX] 500 COG1018 2-498 -111.000 26  [J] COG0060 Isoleucyl-tRNA synthetase
CSGID 1-500 -124.000 50  IDP92046 isoleucine-tRNA synthetase, putative [Toxoplasma gondii ME49] TGME49_007640 [Toxoplasma gondii ME49]
H.sapiens 2-297 -99.700 54  sp|P41252|SYIC_HUMAN Isoleucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2
149-442 -97.100 51  sp|P41252|SYIC_HUMAN Isoleucyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=IARS PE=1 SV=2
224-500 -75.300 26  sp|Q9NSE4|SYIM_HUMAN Isoleucyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=IARS2 PE=1 SV=2
HGM_OVER 13-396 -4.120 12  PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]
NEW_HUMAN_DOMAINS 166-259 -5.540 10  sp|Q9NYP8|CU062_HUMAN Uncharacterized protein C21orf62 OS=Homo sapiens GN=C21orf62 PE=1 SV=2
PDB1018 5-499 -126.000 42  1ile_A mol:protein length:821 ISOLEUCYL-TRNA SYNTHETASE
PfamA32U 18-477 -52.400 23  PF00133.22; SYV_YEAST/156-780; tRNA synthetases class I (I, L, M and V)
SCOP207 1-426 -65.400 25  d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
1-456 -26.500 16  d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}
197-389 -69.200 28  d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
VFDB 2-498 -111.000 26  [J] COG0060 Isoleucyl-tRNA synthetase

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.