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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 968next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15604718|ref|NP_219502.1| hypothetical protein (CT875) [Chlamydia trachomatis D/UW-3/CX] 591 CSGID 30-566 -6.360 12  IDP02820 hypothetical protein lmo2196 [Listeria monocytogenes EGD-e] lmo2196 [Listeria monocytogenes EGD-e]
2 gi|15604719|ref|NP_219503.1| hypothetical protein (CT001) [Chlamydia trachomatis D/UW-3/CX] 90 CSGID 12-60 -9.350 13  IDP06445 gene: H3L; H3L [Monkeypox virus Zaire-96-I-16] NP_536520 [Monkeypox virus Zaire-96-I-16]
3 gi|15604720|ref|NP_219504.1| aspartyl/glutamyl-tRNA amidotransferase subunit C (CT002) [Chlamydia trachomatis D/UW-3/CX] 100 CSGID 4-100 -49.700 17  IDP06269 gene: gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C [Streptococcus pneumoniae TIGR4] NP_344960 [Streptococcus pneumoniae TIGR4]
4 gi|15604721|ref|NP_219505.1| aspartyl/glutamyl-tRNA amidotransferase subunit A (CT003) [Chlamydia trachomatis D/UW-3/CX] 491 CSGID 18-473 -131.000 40  IDP90744 gene: gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1059c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
5 gi|15604722|ref|NP_219506.1| aspartyl/glutamyl-tRNA amidotransferase subunit B (CT004) [Chlamydia trachomatis D/UW-3/CX] 488 CSGID 7-488 -147.000 40  IDP06264 gene: gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B [Streptococcus pneumoniae TIGR4] NP_344958 [Streptococcus pneumoniae TIGR4]
6 gi|15604723|ref|NP_219507.1| hypothetical protein (CT005) [Chlamydia trachomatis D/UW-3/CX] 363 CSGID 154-363 -10.300 IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]
7 gi|15604724|ref|NP_219508.1| hypothetical protein (CT006) [Chlamydia trachomatis D/UW-3/CX] 189 CSGID 15-135 -7.840 15  IDP91372 hypothetical protein VV1_2222 [Vibrio vulnificus CMCP6] VV1_2222 [Vibrio vulnificus CMCP6]
8 gi|15604725|ref|NP_219509.1| hypothetical protein (CT007) [Chlamydia trachomatis D/UW-3/CX] 316 CSGID 1-316 -16.900 IDP02013 gene: pgtE; outer membrane protease [Salmonella typhimurium LT2] STM2395 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
9 gi|15604726|ref|NP_219510.1| ribonuclease HIII (CT008) [Chlamydia trachomatis D/UW-3/CX] 300 CSGID 50-239 -6.800 12  IDP04065 gene: yyaC; putative sporulation protein YyaC [Clostridium perfringens ATCC 13124] CPF_2985 [Clostridium perfringens ATCC 13124]
10 gi|15604727|ref|NP_219511.1| HTH transcriptional regulator (CT009) [Chlamydia trachomatis D/UW-3/CX] 143 CSGID 2-112 -37.100 16  IDP06200 hypothetical protein HP0554 [Helicobacter pylori 26695] NP_207349 [Helicobacter pylori 26695]
11 gi|15604728|ref|NP_219512.1| lipid A biosynthesis lauroyl acyltransferase (CT010) [Chlamydia trachomatis D/UW-3/CX] 455 CSGID 13-345 -90.600 18  IDP95269 lipid A biosynthesis lauroyl acyltransferase [Acinetobacter baumannii ATCC 17978] YP_001085628 [Acinetobacter baumannii ATCC 17978]
28-326 -91.300 19  IDP95262 lipid A biosynthesis lauroyl acyltransferase [Acinetobacter baumannii ATCC 17978] YP_001083488 [Acinetobacter baumannii ATCC 17978]
12 gi|15604729|ref|NP_219513.1| hypothetical protein (CT011) [Chlamydia trachomatis D/UW-3/CX] 418 CSGID 4-415 -55.200 11  IDP05762 hypothetical protein lmo2119 [Listeria monocytogenes EGD-e] lmo2119 [Listeria monocytogenes EGD-e]
13 gi|15604730|ref|NP_219514.1| hypothetical protein (CT012) [Chlamydia trachomatis D/UW-3/CX] 264 CSGID 16-264 -89.500 33  IDP06288 hypothetical protein SP_1561 [Streptococcus pneumoniae TIGR4] NP_346008 [Streptococcus pneumoniae TIGR4]
14 gi|15604731|ref|NP_219515.1| cytochrome d ubiquinol oxidase subunit I (CT013) [Chlamydia trachomatis D/UW-3/CX] 446 CSGID 380-444 -7.120 16  IDP91905 hypothetical protein SpneCM_05473 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005473 [Streptococcus pneumoniae str. Canada MDR_19A]
15 gi|15604732|ref|NP_219516.1| cytochrome d ubiquinol oxidase subunit II (CT014) [Chlamydia trachomatis D/UW-3/CX] 353 CSGID 37-66 -6.270 10  IDP01855 gene: dinI; DNA damage-inducible protein I [Salmonella typhimurium LT2] STM1162 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
16 gi|15604733|ref|NP_219517.1| ATPase (CT015) [Chlamydia trachomatis D/UW-3/CX] 434 CSGID 226-434 -10.500 15  IDP05118 putative helicase [Escherichia coli O157:H7 EDL933] Z5902 [Escherichia coli O157:H7 str. EDL933]
17 gi|15604734|ref|NP_219518.1| hypothetical protein (CT016) [Chlamydia trachomatis D/UW-3/CX] 242 CSGID 1-242 -126.000 100  IDP90360 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_016 [Chlamydia trachomatis D/UW-3/CX]
18 gi|15604735|ref|NP_219519.1| hypothetical protein (CT017) [Chlamydia trachomatis D/UW-3/CX] 433 CSGID 18-401 -49.700 13  IDP05719 peptidase, M23/M37 family [Bacillus anthracis str. Ames] BA_1903 [Bacillus anthracis str. Ames]
19 gi|15604736|ref|NP_219520.1| hypothetical protein (CT018) [Chlamydia trachomatis D/UW-3/CX] 157 CSGID 22-115 -7.030 11  IDP05541 gene: cobS; cobalamin synthase [Clostridium difficile 630] CD3437 [Peptoclostridium difficile 630]
20 gi|15604737|ref|NP_219521.1| isoleucyl-tRNA synthetase (CT019) [Chlamydia trachomatis D/UW-3/CX] 500 CSGID 1-500 -124.000 50  IDP92046 isoleucine-tRNA synthetase, putative [Toxoplasma gondii ME49] TGME49_007640 [Toxoplasma gondii ME49]

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.