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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 21-40 of 8581< prev pagenext page >

# Query Length Result vs. Range Score %id Covered by template(s)
21 [G] COG0021 Transketolase 659 VFDB 1-659 -184.000 48  [G] KOG0523 Transketolase
22 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 335 VFDB 1-334 -99.400 57  [C] KOG0524 Pyruvate dehydrogenase E1, beta subunit
23 [J] COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins 108 VFDB 19-104 -35.500 23  [R] KOG3239 Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1)
24 [J] COG0024 Methionine aminopeptidase 275 VFDB 1-274 -100.000 35  [O] KOG2738 Putative methionine aminopeptidase
25 [P] COG0025 NhaP-type Na+/H+ and K+/H+ antiporters 549 VFDB 1-437 -82.000 15  [P] KOG1965 Sodium/hydrogen exchanger protein
1-515 -70.900 18  [P] KOG1966 Sodium/hydrogen exchanger protein
2-549 -52.000 14  [P] KOG4505 Na+/H+ antiporter
26 [F] COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 363 VFDB 1-363 -88.000 26  [F] COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase)
27 [F] COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) 393 VFDB 2-377 -87.900 26  [F] COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)
28 [EH] COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 583 VFDB 2-578 -97.000 17  [EH] KOG1184 Thiamine pyrophosphate-requiring enzyme
34-579 -120.000 26  [R] COG3960 Glyoxylate carboligase
29 [H] COG0029 Aspartate oxidase 536 VFDB 9-534 -121.000 29  [C] COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
30 [J] COG0030 Dimethyladenosine transferase (rRNA methylation) 307 VFDB 1-307 -111.000 58  [A] KOG0820 Ribosomal RNA adenine dimethylase
31 [E] COG0031 Cysteine synthase 324 VFDB 2-324 -95.400 33  [E] KOG1481 Cysteine synthase
32 [G] COG0033 Phosphoglucomutase 542 VFDB 3-542 -131.000 52  [G] KOG0625 Phosphoglucomutase
33 [F] COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 499 VFDB 12-491 -133.000 42  [F] KOG0572 Glutamine phosphoribosylpyrophosphate amidotransferase
34 [F] COG0035 Uracil phosphoribosyltransferase 209 VFDB 16-165 -16.800 18  [F] COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase
69-205 -14.500 22  [F] COG0634 Hypoxanthine-guanine phosphoribosyltransferase
35 [G] COG0036 Pentose-5-phosphate-3-epimerase 225 VFDB 2-225 -90.700 38  [G] KOG3111 D-ribulose-5-phosphate 3-epimerase
36 [D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 472 VFDB 2-299 -61.200 17  [R] KOG2840 Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily
14-410 -10.700 10  [E] COG0137 Argininosuccinate synthase
37 [P] COG0038 Chloride channel protein EriC 451 VFDB 33-447 -58.900 22  [P] KOG0475 Cl- channel CLC-3 and related proteins (CLC superfamily)
38 [C] COG0039 Malate/lactate dehydrogenases 317 VFDB 2-314 -87.100 38  [C] KOG1495 Lactate dehydrogenase
39 [E] COG0040 ATP phosphoribosyltransferase 213 VFDB 1-213 -72.900 23  [E] KOG2831 ATP phosphoribosyltransferase
40 [F] COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 162 VFDB 2-160 -52.900 17  [R] COG1691 NCAIR mutase (PurE)-related proteins


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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.