FFAS03 list of results CSGID / CSGID

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 7384 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 CSGID 5-867 -237.000 64 IDP00757 alcohol dehydrogenase, iron-containing SACOL0135 [Staphylococcus aureus subsp. aureus COL]
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 CSGID 2-217 -70.400 39 IDP01798 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1130 [Bacillus anthracis str. `Ames Ancestor`]
20-404 -62.100 33 IDP02517 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA2315 [Bacillus anthracis str. `Ames Ancestor`]
23-277 -68.200 37 IDP05609 putative S-layer protein [Bacillus anthracis str. Ames] BA_5054 [Bacillus anthracis str. Ames]
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 CSGID 3-317 -81.900 16 IDP05381 gene: gerLC; spore germination protein GerLC [Bacillus anthracis str. Ames] BA_0711 [Bacillus anthracis str. Ames]
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 CSGID 7-446 -123.000 35 IDP90747 gene: dnaA; chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0001 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 CSGID 2-899 -93.700 16 IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]
172-1070 -76.700 18 IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 CSGID 1-799 -151.000 61 IDP00033 immune inhibitor A metalloprotease BA_1295 [Bacillus anthracis str. Ames]
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 CSGID 6-267 -91.800 46 IDP06272 glutamate racemase [Streptococcus pneumoniae TIGR4] NP_346313 [Streptococcus pneumoniae TIGR4]
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 CSGID 2-257 -102.000 47 IDP93866 uroporphyrinogen-III methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] YP_006005134 [Yersinia enterocolitica subsp. palearctica Y11]
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 CSGID 1-358 -102.000 38 IDP01058 gene: aroB; 3-dehydroquinate synthase STM3486 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 CSGID 3-468 -97.300 32 IDP91250 gene: lmo1201; lmo1201 [Listeria monocytogenes] NT01LM1295 [Listeria monocytogenes EGD-e]
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 CSGID 1-379 -106.000 35 IDP06308 iron-containing alcohol dehydrogenase [Streptococcus pneumoniae TIGR4] NP_346571 [Streptococcus pneumoniae TIGR4]
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 CSGID 10-427 -106.000 49 IDP01842 gene: aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [Coxiella burnetii RSA 493] CBU_0526 [Coxiella burnetii RSA 493]
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 CSGID 3-361 -18.200 10 IDP05431 hypothetical protein lmo1224 [Listeria monocytogenes EGD-e] lmo1224 [Listeria monocytogenes EGD-e]
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 CSGID 1-343 -88.600 59 IDP06090 gene: recA; recombinase A [Helicobacter pylori J99] NP_222862 [Helicobacter pylori J99]
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 CSGID 1-301 -104.000 39 IDP05232 hypothetical protein lmo1420 [Listeria monocytogenes EGD-e] lmo1420 [Listeria monocytogenes EGD-e]
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 CSGID 1-485 -126.000 43 IDP05067 gene: murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile 630] CD2664 [Peptoclostridium difficile 630]
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 CSGID 2-397 -120.000 54 IDP05201 gene: ribA; riboflavin biosynthesis protein [Clostridium difficile 630] CD1698 [Peptoclostridium difficile 630]
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 CSGID 4-268 -95.300 58 IDP00347 gene: racE; hypothetical protein lmo1237 lmo1237 [Listeria monocytogenes EGD-e]
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 CSGID 1-585 -148.000 60 IDP90253 gene: pyk; pyruvate kinase [Staphylococcus aureus subsp. aureus MRSA252] SAR1776 [Staphylococcus aureus subsp. aureus MRSA252]
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 CSGID 1-305 -109.000 60 IDP00658 gene: murB; UDP-N-acetylenolpyruvoylglucosamine reductase SACOL0801 [Staphylococcus aureus subsp. aureus COL]

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames]`	`867`	`CSGID`	`5-867`	`-237.000`	`64`	`IDP00757 alcohol dehydrogenase, iron-containing SACOL0135 [Staphylococcus aureus subsp. aureus COL]`
2	`IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor']`	`404`	`CSGID`	`2-217`	`-70.400`	`39`	IDP01798 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1130 [Bacillus anthracis str. `Ames Ancestor`]
				`20-404`	`-62.100`	`33`	IDP02517 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA2315 [Bacillus anthracis str. `Ames Ancestor`]
				`23-277`	`-68.200`	`37`	`IDP05609 putative S-layer protein [Bacillus anthracis str. Ames] BA_5054 [Bacillus anthracis str. Ames]`
3	`IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor']`	`317`	`CSGID`	`3-317`	`-81.900`	`16`	`IDP05381 gene: gerLC; spore germination protein GerLC [Bacillus anthracis str. Ames] BA_0711 [Bacillus anthracis str. Ames]`
4	`IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]`	`446`	`CSGID`	`7-446`	`-123.000`	`35`	`IDP90747 gene: dnaA; chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0001 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`
5	`IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames]`	`1070`	`CSGID`	`2-899`	`-93.700`	`16`	`IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]`
				`172-1070`	`-76.700`	`18`	`IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]`
6	`IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames]`	`799`	`CSGID`	`1-799`	`-151.000`	`61`	`IDP00033 immune inhibitor A metalloprotease BA_1295 [Bacillus anthracis str. Ames]`
7	`IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames]`	`276`	`CSGID`	`6-267`	`-91.800`	`46`	`IDP06272 glutamate racemase [Streptococcus pneumoniae TIGR4] NP_346313 [Streptococcus pneumoniae TIGR4]`
8	`IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames]`	`258`	`CSGID`	`2-257`	`-102.000`	`47`	`IDP93866 uroporphyrinogen-III methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] YP_006005134 [Yersinia enterocolitica subsp. palearctica Y11]`
9	`IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames]`	`363`	`CSGID`	`1-358`	`-102.000`	`38`	`IDP01058 gene: aroB; 3-dehydroquinate synthase STM3486 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
10	`IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames]`	`474`	`CSGID`	`3-468`	`-97.300`	`32`	`IDP91250 gene: lmo1201; lmo1201 [Listeria monocytogenes] NT01LM1295 [Listeria monocytogenes EGD-e]`
11	`IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames]`	`392`	`CSGID`	`1-379`	`-106.000`	`35`	`IDP06308 iron-containing alcohol dehydrogenase [Streptococcus pneumoniae TIGR4] NP_346571 [Streptococcus pneumoniae TIGR4]`
12	`IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames]`	`429`	`CSGID`	`10-427`	`-106.000`	`49`	`IDP01842 gene: aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [Coxiella burnetii RSA 493] CBU_0526 [Coxiella burnetii RSA 493]`
13	`IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames]`	`372`	`CSGID`	`3-361`	`-18.200`	`10`	`IDP05431 hypothetical protein lmo1224 [Listeria monocytogenes EGD-e] lmo1224 [Listeria monocytogenes EGD-e]`
14	`IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames]`	`343`	`CSGID`	`1-343`	`-88.600`	`59`	`IDP06090 gene: recA; recombinase A [Helicobacter pylori J99] NP_222862 [Helicobacter pylori J99]`
15	`IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames]`	`301`	`CSGID`	`1-301`	`-104.000`	`39`	`IDP05232 hypothetical protein lmo1420 [Listeria monocytogenes EGD-e] lmo1420 [Listeria monocytogenes EGD-e]`
16	`IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames]`	`491`	`CSGID`	`1-485`	`-126.000`	`43`	`IDP05067 gene: murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile 630] CD2664 [Peptoclostridium difficile 630]`
17	`IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames]`	`397`	`CSGID`	`2-397`	`-120.000`	`54`	`IDP05201 gene: ribA; riboflavin biosynthesis protein [Clostridium difficile 630] CD1698 [Peptoclostridium difficile 630]`
18	`IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames]`	`269`	`CSGID`	`4-268`	`-95.300`	`58`	`IDP00347 gene: racE; hypothetical protein lmo1237 lmo1237 [Listeria monocytogenes EGD-e]`
19	`IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames]`	`585`	`CSGID`	`1-585`	`-148.000`	`60`	`IDP90253 gene: pyk; pyruvate kinase [Staphylococcus aureus subsp. aureus MRSA252] SAR1776 [Staphylococcus aureus subsp. aureus MRSA252]`
20	`IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames]`	`305`	`CSGID`	`1-305`	`-109.000`	`60`	`IDP00658 gene: murB; UDP-N-acetylenolpyruvoylglucosamine reductase SACOL0801 [Staphylococcus aureus subsp. aureus COL]`