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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 7384next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 IDP00001 aldehyde-alcohol dehydrogenase BA_4599 [Bacillus anthracis str. Ames] 867 CSGID 5-867 -237.000 64  IDP00757 alcohol dehydrogenase, iron-containing SACOL0135 [Staphylococcus aureus subsp. aureus COL]
2 IDP00002 surface layer protein, (pxo1-54) GBAA_pXO1_0079 [Bacillus anthracis str. 'Ames Ancestor'] 404 CSGID 2-217 -70.400 39  IDP01798 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1130 [Bacillus anthracis str. `Ames Ancestor`]
20-404 -62.100 33  IDP02517 S-layer protein, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA2315 [Bacillus anthracis str. `Ames Ancestor`]
23-277 -68.200 37  IDP05609 putative S-layer protein [Bacillus anthracis str. Ames] BA_5054 [Bacillus anthracis str. Ames]
3 IDP00003 gene: gerXC; spore germination protein xc, (pxo1-112) GBAA_pXO1_0158 [Bacillus anthracis str. 'Ames Ancestor'] 317 CSGID 3-317 -81.900 16  IDP05381 gene: gerLC; spore germination protein GerLC [Bacillus anthracis str. Ames] BA_0711 [Bacillus anthracis str. Ames]
4 IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames] 446 CSGID 7-446 -123.000 35  IDP90747 gene: dnaA; chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0001 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
5 IDP00005 internalin, putative BA_0552 [Bacillus anthracis str. Ames] 1070 CSGID 2-899 -93.700 16  IDP05663 hypothetical protein lmo0333 [Listeria monocytogenes EGD-e] lmo0333 [Listeria monocytogenes EGD-e]
172-1070 -76.700 18  IDP05666 gene: inlA; internalin A [Listeria monocytogenes EGD-e] lmo0433 [Listeria monocytogenes EGD-e]
6 IDP00006 immune inhibitor A metalloprotease BA_0672 [Bacillus anthracis str. Ames] 799 CSGID 1-799 -151.000 61  IDP00033 immune inhibitor A metalloprotease BA_1295 [Bacillus anthracis str. Ames]
7 IDP00007 gene: racE-1; glutamate racemase BA_0847 [Bacillus anthracis str. Ames] 276 CSGID 6-267 -91.800 46  IDP06272 glutamate racemase [Streptococcus pneumoniae TIGR4] NP_346313 [Streptococcus pneumoniae TIGR4]
8 IDP00008 gene: cysG; uroporphyrin-III C-methyltransferase BA_1445 [Bacillus anthracis str. Ames] 258 CSGID 2-257 -102.000 47  IDP93866 uroporphyrinogen-III methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] YP_006005134 [Yersinia enterocolitica subsp. palearctica Y11]
9 IDP00009 3-dehydroquinate synthase BA_1538 [Bacillus anthracis str. Ames] 363 CSGID 1-358 -102.000 38  IDP01058 gene: aroB; 3-dehydroquinate synthase STM3486 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
10 IDP00010 uroporphyrin-III C-methyltransferase, putative BA_2144 [Bacillus anthracis str. Ames] 474 CSGID 3-468 -97.300 32  IDP91250 gene: lmo1201; lmo1201 [Listeria monocytogenes] NT01LM1295 [Listeria monocytogenes EGD-e]
11 IDP00011 alcohol dehydrogenase, iron-containing BA_2222 [Bacillus anthracis str. Ames] 392 CSGID 1-379 -106.000 35  IDP06308 iron-containing alcohol dehydrogenase [Streptococcus pneumoniae TIGR4] NP_346571 [Streptococcus pneumoniae TIGR4]
12 IDP00012 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) BA_2953 [Bacillus anthracis str. Ames] 429 CSGID 10-427 -106.000 49  IDP01842 gene: aroA; 3-phosphoshikimate 1-carboxyvinyltransferase [Coxiella burnetii RSA 493] CBU_0526 [Coxiella burnetii RSA 493]
13 IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames] 372 CSGID 3-361 -18.200 10  IDP05431 hypothetical protein lmo1224 [Listeria monocytogenes EGD-e] lmo1224 [Listeria monocytogenes EGD-e]
14 IDP00014 Protein recA (Recombinase A) BA_3915 [Bacillus anthracis str. Ames] 343 CSGID 1-343 -88.600 59  IDP06090 gene: recA; recombinase A [Helicobacter pylori J99] NP_222862 [Helicobacter pylori J99]
15 IDP00015 UDP-N-acetylenolpyruvoylglucosamine reductase 1 (UDP-N-acetylmuramate dehydrogenase 1) BA_4048 [Bacillus anthracis str. Ames] 301 CSGID 1-301 -104.000 39  IDP05232 hypothetical protein lmo1420 [Listeria monocytogenes EGD-e] lmo1420 [Listeria monocytogenes EGD-e]
16 IDP00016 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase (UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase) (Meso-diaminopimelate-adding enzyme) (Meso-A2pm-adding enzyme) (UDP-N-acetylmuramyl-tripeptide synthetase) (UDP-MurNAc-tripeptide synthetase) BA_4053 [Bacillus anthracis str. Ames] 491 CSGID 1-485 -126.000 43  IDP05067 gene: murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase [Clostridium difficile 630] CD2664 [Peptoclostridium difficile 630]
17 IDP00017 gene: ribBA; Riboflavin biosynthesis protein ribBA [Includes: 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase); GTP cyclohydrolase-2 (GTP cyclohydrolase II)] BA_4333 [Bacillus anthracis str. Ames] 397 CSGID 2-397 -120.000 54  IDP05201 gene: ribA; riboflavin biosynthesis protein [Clostridium difficile 630] CD1698 [Peptoclostridium difficile 630]
18 IDP00018 gene: racE-2; glutamate racemase BA_4717 [Bacillus anthracis str. Ames] 269 CSGID 4-268 -95.300 58  IDP00347 gene: racE; hypothetical protein lmo1237 lmo1237 [Listeria monocytogenes EGD-e]
19 IDP00019 gene: pykA-2; pyruvate kinase BA_4843 [Bacillus anthracis str. Ames] 585 CSGID 1-585 -148.000 60  IDP90253 gene: pyk; pyruvate kinase [Staphylococcus aureus subsp. aureus MRSA252] SAR1776 [Staphylococcus aureus subsp. aureus MRSA252]
20 IDP00020 UDP-N-acetylenolpyruvoylglucosamine reductase 2 (UDP-N-acetylmuramate dehydrogenase 2) BA_5315 [Bacillus anthracis str. Ames] 305 CSGID 1-305 -109.000 60  IDP00658 gene: murB; UDP-N-acetylenolpyruvoylglucosamine reductase SACOL0801 [Staphylococcus aureus subsp. aureus COL]

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.