FFAS03 list of results E.coli / CSGID

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4125 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16127995|ref|NP_414542.1| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655] 21 CSGID 1-19 -6.220 21 IDP92694 TpgX protein [Staphylococcus aureus subsp. aureus ST398] YP_005735174 [Staphylococcus aureus subsp. aureus ST398]
2 gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655] 820 CSGID 1-817 -207.000 30 IDP00585 gene: metL; bifunctional aspartate kinase II/homoserine dehydrogenase II YPO0116 [Yersinia pestis CO92]
3 gi|16127997|ref|NP_414544.1| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655] 310 CSGID 2-308 -87.400 23 IDP90702 gene: thrB; homoserine kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0134 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
4 gi|16127998|ref|NP_414545.1| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655] 428 CSGID 1-428 -118.000 93 IDP00901 gene: thrC; threonine synthase STM0004 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
5 gi|16127999|ref|NP_414546.1|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655] 75 CSGID 1-75 -23.700 46 IDP01747 gene: ypeC; putative periplasmic protein [Salmonella typhimurium LT2] STM2407 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
6 gi|16128000|ref|NP_414547.1| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655] 258 CSGID 1-258 -109.000 65 IDP91427 hypothetical protein VV1_0535 [Vibrio vulnificus CMCP6] VV1_0535 [Vibrio vulnificus CMCP6]
7 gi|16128001|ref|NP_414548.1| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655] 476 CSGID 1-476 -136.000 49 IDP91426 Na+/alanine symporter [Vibrio vulnificus CMCP6] VV1_0536 [Vibrio vulnificus CMCP6]
8 gi|16128002|ref|NP_414549.1| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655] 317 CSGID 1-317 -98.100 47 IDP02095 gene: talA; transaldolase B [Francisella tularensis subsp. tularensis SCHU S4] FTT1093c [Francisella tularensis subsp. tularensis SCHU S4]
9 gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655] 195 CSGID 1-188 -66.200 50 IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]
10 gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655] 188 CSGID 3-188 -92.600 61 IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]
11 gi|16128005|ref|NP_414552.1| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655] 237 CSGID 50-141 -5.620 9 IDP91862 DNA-binding protein [Streptococcus equi subsp. zooepidemicus] SZO_00390 [Streptococcus equi subsp. zooepidemicus]
12 gi|16128007|ref|NP_414554.1|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655] 111 CSGID 32-111 -6.440 13 IDP91909 cell wall surface anchor family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002785 [Streptococcus pneumoniae str. Canada MDR_19A]
13 gi|16128008|ref|NP_414555.1| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655] 638 CSGID 1-638 -173.000 73 IDP02393 gene: dnaK; heat shock protein DnaK [Francisella tularensis subsp. tularensis SCHU S4] FTT1269c [Francisella tularensis subsp. tularensis SCHU S4]
14 gi|16128009|ref|NP_414556.1| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655] 376 CSGID 1-376 -125.000 87 IDP00478 gene: dnaJ; chaperone protein DnaJ YPO0469 [Yersinia pestis CO92]
15 gi|16128010|ref|NP_414557.1| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655] 370 CSGID 298-342 -5.040 10 IDP90117 virokine protein [Monkeypox virus] MPXV_ZAI1979_005_027 [Monkeypox virus]
16 gi|16128012|ref|NP_414559.1| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655] 69 CSGID 3-55 -5.940 13 CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]
17 gi|49175991|ref|YP_025292.1| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655] 50 CSGID 1-48 -5.820 14 IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]
18 gi|16128013|ref|NP_414560.1| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655] 388 CSGID 16-388 -7.240 12 IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]
19 gi|16128014|ref|NP_414561.1| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655] 301 CSGID 6-295 -79.700 15 IDP92556 HTH-type transcriptional regulator ilvY [Vibrio vulnificus CMCP6] VV1_1076 [Vibrio vulnificus CMCP6]
20 gi|16128015|ref|NP_414562.1| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655] 167 CSGID 4-83 -8.650 16 IDP04696 gene: YPCD1.15c; hypothetical protein YPCD1.15c [Yersinia pestis CO92] YPCD1.15c [Yersinia pestis CO92]

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|16127995\|ref\|NP_414542.1\| thr operon leader peptide (thrL b0001 exp) [Escherichia coli str. K-12 substr. MG1655]`	`21`	`CSGID`	`1-19`	`-6.220`	`21`	`IDP92694 TpgX protein [Staphylococcus aureus subsp. aureus ST398] YP_005735174 [Staphylococcus aureus subsp. aureus ST398]`
2	`gi\|16127996\|ref\|NP_414543.1\| fused aspartokinase I and homoserine dehydrogenase I (thrA b0002 exp) [Escherichia coli str. K-12 substr. MG1655]`	`820`	`CSGID`	`1-817`	`-207.000`	`30`	`IDP00585 gene: metL; bifunctional aspartate kinase II/homoserine dehydrogenase II YPO0116 [Yersinia pestis CO92]`
3	`gi\|16127997\|ref\|NP_414544.1\| homoserine kinase (thrB b0003 exp) [Escherichia coli str. K-12 substr. MG1655]`	`310`	`CSGID`	`2-308`	`-87.400`	`23`	`IDP90702 gene: thrB; homoserine kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0134 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`
4	`gi\|16127998\|ref\|NP_414545.1\| threonine synthase (thrC b0004 exp) [Escherichia coli str. K-12 substr. MG1655]`	`428`	`CSGID`	`1-428`	`-118.000`	`93`	`IDP00901 gene: thrC; threonine synthase STM0004 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
5	`gi\|16127999\|ref\|NP_414546.1\|(removed signal:1-23) predicted protein (yaaX b0005 exp) [Escherichia coli str. K-12 substr. MG1655]`	`75`	`CSGID`	`1-75`	`-23.700`	`46`	`IDP01747 gene: ypeC; putative periplasmic protein [Salmonella typhimurium LT2] STM2407 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
6	`gi\|16128000\|ref\|NP_414547.1\| conserved protein, UPF0246 family (yaaA b0006 exp) [Escherichia coli str. K-12 substr. MG1655]`	`258`	`CSGID`	`1-258`	`-109.000`	`65`	`IDP91427 hypothetical protein VV1_0535 [Vibrio vulnificus CMCP6] VV1_0535 [Vibrio vulnificus CMCP6]`
7	`gi\|16128001\|ref\|NP_414548.1\| predicted transporter (yaaJ b0007 exp) [Escherichia coli str. K-12 substr. MG1655]`	`476`	`CSGID`	`1-476`	`-136.000`	`49`	`IDP91426 Na+/alanine symporter [Vibrio vulnificus CMCP6] VV1_0536 [Vibrio vulnificus CMCP6]`
8	`gi\|16128002\|ref\|NP_414549.1\| transaldolase B (talB b0008 exp) [Escherichia coli str. K-12 substr. MG1655]`	`317`	`CSGID`	`1-317`	`-98.100`	`47`	`IDP02095 gene: talA; transaldolase B [Francisella tularensis subsp. tularensis SCHU S4] FTT1093c [Francisella tularensis subsp. tularensis SCHU S4]`
9	`gi\|16128003\|ref\|NP_414550.1\| molybdochelatase incorporating molybdenum into molybdopterin (mog b0009 exp) [Escherichia coli str. K-12 substr. MG1655]`	`195`	`CSGID`	`1-188`	`-66.200`	`50`	`IDP06143 gene: mogA; molybdenum cofactor biosynthesis protein MogA [Helicobacter pylori J99] NP_223453 [Helicobacter pylori J99]`
10	`gi\|16128004\|ref\|NP_414551.1\| inner membrane protein, Grp1_Fun34_YaaH family (yaaH b0010 exp) [Escherichia coli str. K-12 substr. MG1655]`	`188`	`CSGID`	`3-188`	`-92.600`	`61`	`IDP91444 hypothetical protein VV1_0416 [Vibrio vulnificus CMCP6] VV1_0416 [Vibrio vulnificus CMCP6]`
11	`gi\|16128005\|ref\|NP_414552.1\| conserved protein, UPF0174 family (yaaW b0011 exp) [Escherichia coli str. K-12 substr. MG1655]`	`237`	`CSGID`	`50-141`	`-5.620`	`9`	`IDP91862 DNA-binding protein [Streptococcus equi subsp. zooepidemicus] SZO_00390 [Streptococcus equi subsp. zooepidemicus]`
12	`gi\|16128007\|ref\|NP_414554.1\|(removed signal:1-23) conserved protein, UPF0412 family (yaaI b0013 exp) [Escherichia coli str. K-12 substr. MG1655]`	`111`	`CSGID`	`32-111`	`-6.440`	`13`	`IDP91909 cell wall surface anchor family protein, partial [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002785 [Streptococcus pneumoniae str. Canada MDR_19A]`
13	`gi\|16128008\|ref\|NP_414555.1\| chaperone Hsp70, co-chaperone with DnaJ (dnaK b0014 exp) [Escherichia coli str. K-12 substr. MG1655]`	`638`	`CSGID`	`1-638`	`-173.000`	`73`	`IDP02393 gene: dnaK; heat shock protein DnaK [Francisella tularensis subsp. tularensis SCHU S4] FTT1269c [Francisella tularensis subsp. tularensis SCHU S4]`
14	`gi\|16128009\|ref\|NP_414556.1\| chaperone Hsp40, co-chaperone with DnaK (dnaJ b0015 exp) [Escherichia coli str. K-12 substr. MG1655]`	`376`	`CSGID`	`1-376`	`-125.000`	`87`	`IDP00478 gene: dnaJ; chaperone protein DnaJ YPO0469 [Yersinia pestis CO92]`
15	`gi\|16128010\|ref\|NP_414557.1\| IS186 transposase (insL b0016 exp) [Escherichia coli str. K-12 substr. MG1655]`	`370`	`CSGID`	`298-342`	`-5.040`	`10`	`IDP90117 virokine protein [Monkeypox virus] MPXV_ZAI1979_005_027 [Monkeypox virus]`
16	`gi\|16128012\|ref\|NP_414559.1\| regulatory protein for HokC, overlaps CDS of hokC (mokC b0018 exp) [Escherichia coli str. K-12 substr. MG1655]`	`69`	`CSGID`	`3-55`	`-5.940`	`13`	`CPX_91710_91752 Complex of NXF1_HUMAN with TIP_SHV2C [Undefined organism]`
17	`gi\|49175991\|ref\|YP_025292.1\| toxic membrane protein, small (hokC b4412 exp) [Escherichia coli str. K-12 substr. MG1655]`	`50`	`CSGID`	`1-48`	`-5.820`	`14`	`IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]`
18	`gi\|16128013\|ref\|NP_414560.1\| sodium-proton antiporter (nhaA b0019 exp) [Escherichia coli str. K-12 substr. MG1655]`	`388`	`CSGID`	`16-388`	`-7.240`	`12`	`IDP91361 NhaP-type Na+/H+ and K+/H+ antiporters [Vibrio vulnificus CMCP6] VV1_2840 [Vibrio vulnificus CMCP6]`
19	`gi\|16128014\|ref\|NP_414561.1\| DNA-binding transcriptional activator (nhaR b0020 exp) [Escherichia coli str. K-12 substr. MG1655]`	`301`	`CSGID`	`6-295`	`-79.700`	`15`	`IDP92556 HTH-type transcriptional regulator ilvY [Vibrio vulnificus CMCP6] VV1_1076 [Vibrio vulnificus CMCP6]`
20	`gi\|16128015\|ref\|NP_414562.1\| IS1 transposase B (insB b0021 exp) [Escherichia coli str. K-12 substr. MG1655]`	`167`	`CSGID`	`4-83`	`-8.650`	`16`	`IDP04696 gene: YPCD1.15c; hypothetical protein YPCD1.15c [Yersinia pestis CO92] YPCD1.15c [Yersinia pestis CO92]`