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Results: 1-20 of 3770next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 CSGID 1-451 -125.000 45  IDP00004 Chromosomal replication initiator protein dnaA BA_0001 [Bacillus anthracis str. Ames]
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 CSGID 1-365 -97.900 24  IDP90614 DNA polymerase III subunit beta [Vibrio cholerae O1 biovar eltor str. N16961] VC0013 [Vibrio cholerae O1 biovar El Tor str. N16961]
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 CSGID 13-71 -21.600 22  IDP91360 16S rRNA uridine-516 pseudouridylate synthase [Vibrio vulnificus CMCP6] VV1_2843 [Vibrio vulnificus CMCP6]
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 CSGID 1-359 -103.000 23  IDP00109 gene: recF; Rec protein NT01SF4517 [Shigella flexneri 2a str. 2457T]
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 CSGID 3-645 -200.000 60  IDP04572 DNA gyrase subunit B [Bacillus anthracis str. Sterne] BAS0005 [Bacillus anthracis str. Sterne]
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 CSGID 3-848 -174.000 48  IDP04555 gene: gyrA; DNA gyrase subunit A [Salmonella typhimurium LT2] STM2272_1_878 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 CSGID 2-281 -82.700 27  IDP01694 gene: fumA; fumarate hydratase, class I [Yersinia pestis CO92] YPO3335 [Yersinia pestis CO92]
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 CSGID 27-46 -6.200 25  IDP00603 gene: sarX; staphylococcal accessory protein X SACOL0726 [Staphylococcus aureus subsp. aureus COL]
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 CSGID 1-182 -71.700 43  IDP02526 gene: fumA; fumerate hydratase [Francisella tularensis subsp. tularensis SCHU S4] FTT1600c [Francisella tularensis subsp. tularensis SCHU S4]
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 CSGID 2-329 -55.200 16  IDP02458 putative oxidoreductase [Yersinia pestis CO92] YPO2259 [Yersinia pestis CO92]
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 CSGID 1-247 -80.500 23  IDP00219 probable deoR-family transcriptional regulatory protein YPO1938 [Yersinia pestis CO92]
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 CSGID 1-304 -85.800 29  IDP02618 gene: fruK; 1-phosphofructokinase [Salmonella typhimurium LT2] STM2205 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 CSGID 1-641 -162.000 49  IDP04367 PTS system, fructose-specific IIABC component [Bacillus anthracis str. Sterne] BAS3563 [Bacillus anthracis str. Sterne]
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 CSGID 1-586 -159.000 53  IDP06131 gene: dnaK; molecular chaperone DnaK [Helicobacter pylori J99] NP_222822 [Helicobacter pylori J99]
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 CSGID 3-141 -11.200 IDP04265 putative cell division protein DivIVA [Clostridium perfringens ATCC 13124] CPF_2105 [Clostridium perfringens ATCC 13124]
34-151 -14.200 12  IDP06542 gene: divIVA; cell division initiation protein DivIVA [Enterococcus faecium DO] AFK58425 [Enterococcus faecium DO]
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 CSGID 2-228 -104.000 48  IDP91043 gene: vanRG; response regulator [Enterococcus faecalis] EFE0003 [Enterococcus faecalis]
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 CSGID 24-427 -78.000 32  IDP04550 sensor histidine kinase [Clostridium perfringens ATCC 13124] CPF_0460 [Clostridium perfringens ATCC 13124]
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 CSGID 10-761 -150.000 18  IDP02220 gene: acnA; aconitate hydratase [Yersinia pestis CO92] YPO2221 [Yersinia pestis CO92]
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 CSGID 282-404 -5.380 13  IDP95412 set236a-014 [Undefined organism]
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 CSGID 1-134 -13.000 12  IDP93896 secretion system chaperone SscA [Yersinia enterocolitica subsp. palearctica Y11] YP_006007024 [Yersinia enterocolitica subsp. palearctica Y11]
1-182 -13.000 12  IDP90425 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_547 [Chlamydia trachomatis D/UW-3/CX]
179-679 -17.600 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
631-847 -14.700 12  IDP04216 gene: ruvB; Holliday junction DNA helicase B [Salmonella typhimurium LT2] STM1894_1_336 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
631-877 -14.300 16  IDP05235 gene: ruvB; Holliday junction DNA helicase B [Listeria monocytogenes EGD-e] lmo1532 [Listeria monocytogenes EGD-e]

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11.