FFAS03 list of results E.rectale / VFDB

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656] 453 VFDB 3-452 -118.000 33 [L] COG0593 ATPase involved in DNA replication initiation
2 gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656] 370 VFDB 1-368 -98.400 22 [L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)
3 gi|238922435|ref|YP_002935948.1| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656] 71 VFDB 5-70 -33.800 40 [S] COG2501 Uncharacterized conserved protein
4 gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656] 362 VFDB 1-359 -103.000 23 [L] COG1195 Recombinational DNA repair ATPase (RecF pathway)
5 gi|238922437|ref|YP_002935950.1| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656] 645 VFDB 5-645 -151.000 53 [L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
6 gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656] 852 VFDB 3-830 -161.000 43 [L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit
7 gi|238922439|ref|YP_002935952.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656] 281 VFDB 8-281 -94.300 27 [C] COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain
8 gi|238922440|ref|YP_002935953.1| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656] 47 VFDB 11-47 -4.490 16 [KT] COG3835 Sugar diacid utilization regulator
9 gi|238922441|ref|YP_002935954.1| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656] 183 VFDB 1-182 -86.300 37 [C] COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
10 gi|238922442|ref|YP_002935955.1| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656] 329 VFDB 2-329 -84.800 18 [GQ] KOG2741 Dimeric dihydrodiol dehydrogenase
11 gi|238922443|ref|YP_002935956.1| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656] 247 VFDB 1-247 -79.800 27 [KG] COG1349 Transcriptional regulators of sugar metabolism
12 gi|238922444|ref|YP_002935957.1| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656] 305 VFDB 1-304 -84.600 26 [G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB)
13 gi|238922445|ref|YP_002935958.1| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656] 642 VFDB 6-256 -44.500 20 [G] COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain
172-295 -51.300 49 [G] COG1445 Phosphotransferase system fructose-specific component IIB
302-641 -87.800 55 [G] COG1299 Phosphotransferase system, fructose-specific IIC component
14 gi|238922446|ref|YP_002935959.1| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656] 586 VFDB 1-585 -154.000 54 [O] COG0443 Molecular chaperone
15 gi|238922447|ref|YP_002935960.1| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656] 290 VFDB 3-139 -11.000 15 [D] COG3599 Cell division initiation protein
16 gi|238922448|ref|YP_002935961.1| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656] 230 VFDB 2-229 -98.000 35 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
17 gi|238922449|ref|YP_002935962.1|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656] 428 VFDB 125-427 -52.500 17 [T] COG0642 Signal transduction histidine kinase
18 gi|238922450|ref|YP_002935963.1| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656] 761 VFDB 1-761 -156.000 18 [AJ] KOG0452 RNA-binding translational regulator IRP (aconitase superfamily)
19 gi|238922451|ref|YP_002935964.1| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656] 437 VFDB 52-426 -54.600 16 [R] COG0628 Predicted permease
20 gi|238922452|ref|YP_002935965.1| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656] 877 VFDB 9-239 -11.100 12 [DO] KOG1174 Anaphase-promoting complex (APC), subunit 7
10-187 -14.900 15 [R] COG4105 DNA uptake lipoprotein
255-876 -11.000 8 [L] KOG1514 Origin recognition complex, subunit 1, and related proteins
532-851 -11.900 9 [L] KOG2028 ATPase related to the helicase subunit of the Holliday junction resolvase
614-847 -16.300 9 [R] COG2607 Predicted ATPase (AAA+ superfamily)
631-877 -12.800 13 [L] COG2812 DNA polymerase III, gamma/tau subunits

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|238922433\|ref\|YP_002935946.1\| chromosomal replication initiation protein (EUBREC_0001) [Eubacterium rectale ATCC 33656]`	`453`	`VFDB`	`3-452`	`-118.000`	`33`	`[L] COG0593 ATPase involved in DNA replication initiation`
2	`gi\|238922434\|ref\|YP_002935947.1\| DNA polymerase III, beta subunit (EUBREC_0002) [Eubacterium rectale ATCC 33656]`	`370`	`VFDB`	`1-368`	`-98.400`	`22`	`[L] COG0592 DNA polymerase sliding clamp subunit (PCNA homolog)`
3	`gi\|238922435\|ref\|YP_002935948.1\| hypothetical protein (EUBREC_0003) [Eubacterium rectale ATCC 33656]`	`71`	`VFDB`	`5-70`	`-33.800`	`40`	`[S] COG2501 Uncharacterized conserved protein`
4	`gi\|238922436\|ref\|YP_002935949.1\| DNA replication and repair protein RecF (EUBREC_0004) [Eubacterium rectale ATCC 33656]`	`362`	`VFDB`	`1-359`	`-103.000`	`23`	`[L] COG1195 Recombinational DNA repair ATPase (RecF pathway)`
5	`gi\|238922437\|ref\|YP_002935950.1\| DNA gyrase, B subunit (EUBREC_0005) [Eubacterium rectale ATCC 33656]`	`645`	`VFDB`	`5-645`	`-151.000`	`53`	`[L] COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit`
6	`gi\|238922438\|ref\|YP_002935951.1\| DNA gyrase, A subunit (EUBREC_0006) [Eubacterium rectale ATCC 33656]`	`852`	`VFDB`	`3-830`	`-161.000`	`43`	`[L] COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit`
7	`gi\|238922439\|ref\|YP_002935952.1\| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (EUBREC_0007) [Eubacterium rectale ATCC 33656]`	`281`	`VFDB`	`8-281`	`-94.300`	`27`	`[C] COG1951 Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain`
8	`gi\|238922440\|ref\|YP_002935953.1\| hypothetical protein (EUBREC_0008) [Eubacterium rectale ATCC 33656]`	`47`	`VFDB`	`11-47`	`-4.490`	`16`	`[KT] COG3835 Sugar diacid utilization regulator`
9	`gi\|238922441\|ref\|YP_002935954.1\| fumarate hydratase subunit B (EUBREC_0009) [Eubacterium rectale ATCC 33656]`	`183`	`VFDB`	`1-182`	`-86.300`	`37`	`[C] COG1838 Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain`
10	`gi\|238922442\|ref\|YP_002935955.1\| putative oxidoreductase (EUBREC_0016) [Eubacterium rectale ATCC 33656]`	`329`	`VFDB`	`2-329`	`-84.800`	`18`	`[GQ] KOG2741 Dimeric dihydrodiol dehydrogenase`
11	`gi\|238922443\|ref\|YP_002935956.1\| transcription repressor of fructose operon FruR (EUBREC_0017) [Eubacterium rectale ATCC 33656]`	`247`	`VFDB`	`1-247`	`-79.800`	`27`	`[KG] COG1349 Transcriptional regulators of sugar metabolism`
12	`gi\|238922444\|ref\|YP_002935957.1\| fructose-1-phosphate kinase (EUBREC_0018) [Eubacterium rectale ATCC 33656]`	`305`	`VFDB`	`1-304`	`-84.600`	`26`	`[G] COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB)`
13	`gi\|238922445\|ref\|YP_002935958.1\| PTS system, fructose-specific, IIABC component (EUBREC_0019) [Eubacterium rectale ATCC 33656]`	`642`	`VFDB`	`6-256`	`-44.500`	`20`	`[G] COG4668 Mannitol/fructose-specific phosphotransferase system, IIA domain`
				`172-295`	`-51.300`	`49`	`[G] COG1445 Phosphotransferase system fructose-specific component IIB`
				`302-641`	`-87.800`	`55`	`[G] COG1299 Phosphotransferase system, fructose-specific IIC component`
14	`gi\|238922446\|ref\|YP_002935959.1\| chaperone protein DnaK (EUBREC_0020) [Eubacterium rectale ATCC 33656]`	`586`	`VFDB`	`1-585`	`-154.000`	`54`	`[O] COG0443 Molecular chaperone`
15	`gi\|238922447\|ref\|YP_002935960.1\| hypothetical protein (EUBREC_0021) [Eubacterium rectale ATCC 33656]`	`290`	`VFDB`	`3-139`	`-11.000`	`15`	`[D] COG3599 Cell division initiation protein`
16	`gi\|238922448\|ref\|YP_002935961.1\| DNA-binding response regulator (EUBREC_0022) [Eubacterium rectale ATCC 33656]`	`230`	`VFDB`	`2-229`	`-98.000`	`35`	`[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain`
17	`gi\|238922449\|ref\|YP_002935962.1\|(removed signalp:1-29) hypothetical protein (EUBREC_0023) [Eubacterium rectale ATCC 33656]`	`428`	`VFDB`	`125-427`	`-52.500`	`17`	`[T] COG0642 Signal transduction histidine kinase`
18	`gi\|238922450\|ref\|YP_002935963.1\| hypothetical protein (EUBREC_0024) [Eubacterium rectale ATCC 33656]`	`761`	`VFDB`	`1-761`	`-156.000`	`18`	`[AJ] KOG0452 RNA-binding translational regulator IRP (aconitase superfamily)`
19	`gi\|238922451\|ref\|YP_002935964.1\| hypothetical protein (EUBREC_0025) [Eubacterium rectale ATCC 33656]`	`437`	`VFDB`	`52-426`	`-54.600`	`16`	`[R] COG0628 Predicted permease`
20	`gi\|238922452\|ref\|YP_002935965.1\| hypothetical protein (EUBREC_0026) [Eubacterium rectale ATCC 33656]`	`877`	`VFDB`	`9-239`	`-11.100`	`12`	`[DO] KOG1174 Anaphase-promoting complex (APC), subunit 7`
				`10-187`	`-14.900`	`15`	`[R] COG4105 DNA uptake lipoprotein`
				`255-876`	`-11.000`	`8`	`[L] KOG1514 Origin recognition complex, subunit 1, and related proteins`
				`532-851`	`-11.900`	`9`	`[L] KOG2028 ATPase related to the helicase subunit of the Holliday junction resolvase`
				`614-847`	`-16.300`	`9`	`[R] COG2607 Predicted ATPase (AAA+ superfamily)`
				`631-877`	`-12.800`	`13`	`[L] COG2812 DNA polymerase III, gamma/tau subunits`