FFAS03 list of results H.pylori / COG1018

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 COG1018 2-135 -71.700 27 [K] COG0781 Transcription termination factor
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 COG1018 10-156 -81.600 50 [H] COG0054 Riboflavin synthase beta-chain
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 COG1018 1-276 -83.900 41 [M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 COG1018 2-219 -87.300 23 [P] KOG1578 Predicted carbonic anhydrase involved in protection against oxidative damage
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 COG1018 2-227 -92.500 33 [F] COG0284 Orotidine-5`-phosphate decarboxylase
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 COG1018 1-276 -117.000 39 [H] COG0414 Panthothenate synthetase
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 COG1018 3-467 -9.730 7 [TU] KOG3895 Synaptic vesicle protein Synapsin
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 COG1018 1-537 -144.000 51 [O] KOG0356 Mitochondrial chaperonin, Cpn60/Hsp60p
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 COG1018 1-90 -46.200 40 [O] COG0234 Co-chaperonin GroES (HSP10)
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 COG1018 1-558 -116.000 26 [L] COG0358 DNA primase (bacterial type)
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 COG1018 2-346 -68.800 13 [J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 COG1018 7-275 -11.700 13 [R] COG3970 Fumarylacetoacetate (FAA) hydrolase family protein
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 COG1018 8-91 -12.000 17 [U] COG3838 Type IV secretory pathway, VirB2 components (pilins)
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 COG1018 11-86 -10.500 7 [U] COG3702 Type IV secretory pathway, VirB3 components
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 COG1018 257-786 -80.600 15 [U] COG3451 Type IV secretory pathway, VirB4 components
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 COG1018 1-469 -162.000 98 [S] COG3014 Uncharacterized protein conserved in bacteria
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 COG1018 1-198 -35.000 23 [NT] COG0835 Chemotaxis signal transduction protein
196-321 -33.800 20 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 COG1018 2-405 -80.100 13 [E] COG0019 Diaminopimelate decarboxylase
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 COG1018 30-189 -49.600 14 [S] KOG4268 Uncharacterized conserved protein containing PAP2 domain
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 COG1018 3-521 -96.800 25 [R] COG2194 Predicted membrane-associated, metal-dependent hydrolase

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|15644635\|ref\|NP_206803.1\| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695]`	`138`	`COG1018`	`2-135`	`-71.700`	`27`	`[K] COG0781 Transcription termination factor`
2	`gi\|15644636\|ref\|NP_206804.1\| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695]`	`156`	`COG1018`	`10-156`	`-81.600`	`50`	`[H] COG0054 Riboflavin synthase beta-chain`
3	`gi\|15644637\|ref\|NP_206805.1\| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695]`	`276`	`COG1018`	`1-276`	`-83.900`	`41`	`[M] COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase`
4	`gi\|15644638\|ref\|NP_206806.1\| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695]`	`221`	`COG1018`	`2-219`	`-87.300`	`23`	`[P] KOG1578 Predicted carbonic anhydrase involved in protection against oxidative damage`
5	`gi\|15644639\|ref\|NP_206807.1\| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695]`	`227`	`COG1018`	`2-227`	`-92.500`	`33`	[F] COG0284 Orotidine-5`-phosphate decarboxylase
6	`gi\|15644640\|ref\|NP_206808.1\| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695]`	`276`	`COG1018`	`1-276`	`-117.000`	`39`	`[H] COG0414 Panthothenate synthetase`
7	`gi\|15646197\|ref\|NP_206811.1\| outer membrane protein (HP0009) [Helicobacter pylori 26695]`	`634`	`COG1018`	`3-467`	`-9.730`	`7`	`[TU] KOG3895 Synaptic vesicle protein Synapsin`
8	`gi\|15644643\|ref\|NP_206812.1\| chaperonin GroEL (HP0010) [Helicobacter pylori 26695]`	`546`	`COG1018`	`1-537`	`-144.000`	`51`	`[O] KOG0356 Mitochondrial chaperonin, Cpn60/Hsp60p`
9	`gi\|15644644\|ref\|NP_206813.1\| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695]`	`118`	`COG1018`	`1-90`	`-46.200`	`40`	`[O] COG0234 Co-chaperonin GroES (HSP10)`
10	`gi\|15644645\|ref\|NP_206814.1\| DNA primase (HP0012) [Helicobacter pylori 26695]`	`559`	`COG1018`	`1-558`	`-116.000`	`26`	`[L] COG0358 DNA primase (bacterial type)`
11	`gi\|15644646\|ref\|NP_206815.1\| hypothetical protein (HP0013) [Helicobacter pylori 26695]`	`350`	`COG1018`	`2-346`	`-68.800`	`13`	`[J] COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain`
12	`gi\|15644647\|ref\|NP_206816.1\| hypothetical protein (HP0014) [Helicobacter pylori 26695]`	`275`	`COG1018`	`7-275`	`-11.700`	`13`	`[R] COG3970 Fumarylacetoacetate (FAA) hydrolase family protein`
13	`gi\|15644648\|ref\|NP_206817.1\| hypothetical protein (HP0015) [Helicobacter pylori 26695]`	`93`	`COG1018`	`8-91`	`-12.000`	`17`	`[U] COG3838 Type IV secretory pathway, VirB2 components (pilins)`
14	`gi\|15644649\|ref\|NP_206818.1\| hypothetical protein (HP0016) [Helicobacter pylori 26695]`	`87`	`COG1018`	`11-86`	`-10.500`	`7`	`[U] COG3702 Type IV secretory pathway, VirB3 components`
15	`gi\|15644650\|ref\|NP_206819.1\| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695]`	`787`	`COG1018`	`257-786`	`-80.600`	`15`	`[U] COG3451 Type IV secretory pathway, VirB4 components`
16	`gi\|15644651\|ref\|NP_206820.1\| hypothetical protein (HP0018) [Helicobacter pylori 26695]`	`469`	`COG1018`	`1-469`	`-162.000`	`98`	`[S] COG3014 Uncharacterized protein conserved in bacteria`
17	`gi\|15644652\|ref\|NP_206821.1\| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695]`	`321`	`COG1018`	`1-198`	`-35.000`	`23`	`[NT] COG0835 Chemotaxis signal transduction protein`
				`196-321`	`-33.800`	`20`	`[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain`
18	`gi\|15644653\|ref\|NP_206822.1\| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695]`	`405`	`COG1018`	`2-405`	`-80.100`	`13`	`[E] COG0019 Diaminopimelate decarboxylase`
19	`gi\|15644654\|ref\|NP_206823.1\| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695]`	`190`	`COG1018`	`30-189`	`-49.600`	`14`	`[S] KOG4268 Uncharacterized conserved protein containing PAP2 domain`
20	`gi\|15644655\|ref\|NP_206824.1\| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695]`	`521`	`COG1018`	`3-521`	`-96.800`	`25`	`[R] COG2194 Predicted membrane-associated, metal-dependent hydrolase`