FFAS03 list of results H.pylori / CSGID

Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 1653 next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|15644635|ref|NP_206803.1| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695] 138 CSGID 42-127 -6.110 15 IDP91467 putative type III secretion system lipoprotein EprK [Vibrio parahaemolyticus RIMD 2210633] VPA1367 [Vibrio parahaemolyticus RIMD 2210633]
2 gi|15644636|ref|NP_206804.1| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695] 156 CSGID 1-154 -85.400 67 IDP90519 gene: ribH; riboflavin synthase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0383c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
3 gi|15644637|ref|NP_206805.1| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695] 276 CSGID 9-276 -99.800 62 IDP90656 gene: kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0384c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
4 gi|15644638|ref|NP_206806.1| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695] 221 CSGID 2-220 -85.900 25 IDP00909 gene: yadF; carbonic anhydrase STM0171 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
5 gi|15644639|ref|NP_206807.1| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695] 227 CSGID 2-227 -92.500 33 IDP90525 orotidine 5`-phosphate decarboxylase [Vibrio cholerae O1 biovar eltor str. N16961] VC1911 [Vibrio cholerae O1 biovar El Tor str. N16961]
6 gi|15644640|ref|NP_206808.1| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695] 276 CSGID 1-276 -124.000 100 IDP06221 gene: panC; pantoate--beta-alanine ligase [Helicobacter pylori 26695] NP_206808 [Helicobacter pylori 26695]
7 gi|15646197|ref|NP_206811.1| outer membrane protein (HP0009) [Helicobacter pylori 26695] 634 CSGID 2-483 -11.500 8 IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]
351-634 -42.400 15 IDP06043 hypothetical protein jhp0370 [Helicobacter pylori J99] NP_223089 [Helicobacter pylori J99]
8 gi|15644643|ref|NP_206812.1| chaperonin GroEL (HP0010) [Helicobacter pylori 26695] 546 CSGID 1-527 -132.000 57 IDP01497 gene: groEL; chaperonin GroEL VCA0820 [Vibrio cholerae O1 biovar El Tor str. N16961]
9 gi|15644644|ref|NP_206813.1| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695] 118 CSGID 1-91 -49.400 47 IDP01690 gene: groES; chaperonin, 10 kDa [Coxiella burnetii RSA 493] CBU_1719 [Coxiella burnetii RSA 493]
10 gi|15644645|ref|NP_206814.1| DNA primase (HP0012) [Helicobacter pylori 26695] 559 CSGID 1-555 -117.000 24 IDP05233 gene: dnaG; DNA primase [Listeria monocytogenes EGD-e] lmo1455 [Listeria monocytogenes EGD-e]
11 gi|15644646|ref|NP_206815.1| hypothetical protein (HP0013) [Helicobacter pylori 26695] 350 CSGID 2-346 -69.400 13 IDP90692 gene: trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CO92] YPO1638 [Yersinia pestis CO92]
12 gi|15644647|ref|NP_206816.1| hypothetical protein (HP0014) [Helicobacter pylori 26695] 275 CSGID 7-275 -12.800 13 IDP04721 conserved hypothetical protein [Yersinia pestis CO92] YPO1289 [Yersinia pestis CO92]
13 gi|15644648|ref|NP_206817.1| hypothetical protein (HP0015) [Helicobacter pylori 26695] 93 CSGID 14-63 -5.410 14 IDP91727 gene: BCL2L11; bcl-2-like protein 11 isoform 1 [Homo sapiens] NP_619527 [Homo sapiens]
14 gi|15644649|ref|NP_206818.1| hypothetical protein (HP0016) [Helicobacter pylori 26695] 87 CSGID 8-81 -6.600 19 IDP95161 type IV secretory pathway VirB3-4 component [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920281 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
15 gi|15644650|ref|NP_206819.1| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695] 787 CSGID 1-787 -140.000 17 IDP95161 type IV secretory pathway VirB3-4 component [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920281 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
16 gi|15644651|ref|NP_206820.1| hypothetical protein (HP0018) [Helicobacter pylori 26695] 469 CSGID 1-188 -24.100 12 IDP05313 putative lipoprotein [Bacillus anthracis str. Ames] BA_1061 [Bacillus anthracis str. Ames]
1-241 -18.600 11 IDP01392 lipoprotein NlpI VC0648 [Vibrio cholerae O1 biovar El Tor str. N16961]
15-378 -13.200 8 IDP90308 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_700 [Chlamydia trachomatis D/UW-3/CX]
34-348 -13.600 11 IDP04095 hypothetical protein [Yersinia pestis CO92] YPO1987 [Yersinia pestis CO92]
17 gi|15644652|ref|NP_206821.1| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695] 321 CSGID 1-321 -80.300 27 IDP00997 putative chemotaxis signal transduction protein STM2314 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
18 gi|15644653|ref|NP_206822.1| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695] 405 CSGID 2-405 -84.700 15 IDP00434 gene: lysA; diaminopimelate decarboxylase YPO0796 [Yersinia pestis CO92]
19 gi|15644654|ref|NP_206823.1| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695] 190 CSGID 25-189 -64.400 25 IDP06119 hypothetical protein jhp1487 [Helicobacter pylori J99] NP_224205 [Helicobacter pylori J99]
20 gi|15644655|ref|NP_206824.1| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695] 521 CSGID 184-517 -23.200 12 IDP02230 putative sulfatase [Yersinia pestis CO92] YPO0829 [Yersinia pestis CO92]

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|15644635\|ref\|NP_206803.1\| transcription antitermination protein NusB (HP0001) [Helicobacter pylori 26695]`	`138`	`CSGID`	`42-127`	`-6.110`	`15`	`IDP91467 putative type III secretion system lipoprotein EprK [Vibrio parahaemolyticus RIMD 2210633] VPA1367 [Vibrio parahaemolyticus RIMD 2210633]`
2	`gi\|15644636\|ref\|NP_206804.1\| 6,7-dimethyl-8-ribityllumazine synthase (HP0002) [Helicobacter pylori 26695]`	`156`	`CSGID`	`1-154`	`-85.400`	`67`	`IDP90519 gene: ribH; riboflavin synthase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0383c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`
3	`gi\|15644637\|ref\|NP_206805.1\| 2-dehydro-3-deoxyphosphooctonate aldolase (HP0003) [Helicobacter pylori 26695]`	`276`	`CSGID`	`9-276`	`-99.800`	`62`	`IDP90656 gene: kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0384c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`
4	`gi\|15644638\|ref\|NP_206806.1\| carbonic anhydrase (icfA) (HP0004) [Helicobacter pylori 26695]`	`221`	`CSGID`	`2-220`	`-85.900`	`25`	`IDP00909 gene: yadF; carbonic anhydrase STM0171 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
5	`gi\|15644639\|ref\|NP_206807.1\| orotidine 5'-phosphate decarboxylase (HP0005) [Helicobacter pylori 26695]`	`227`	`CSGID`	`2-227`	`-92.500`	`33`	IDP90525 orotidine 5`-phosphate decarboxylase [Vibrio cholerae O1 biovar eltor str. N16961] VC1911 [Vibrio cholerae O1 biovar El Tor str. N16961]
6	`gi\|15644640\|ref\|NP_206808.1\| pantoate--beta-alanine ligase (HP0006) [Helicobacter pylori 26695]`	`276`	`CSGID`	`1-276`	`-124.000`	`100`	`IDP06221 gene: panC; pantoate--beta-alanine ligase [Helicobacter pylori 26695] NP_206808 [Helicobacter pylori 26695]`
7	`gi\|15646197\|ref\|NP_206811.1\| outer membrane protein (HP0009) [Helicobacter pylori 26695]`	`634`	`CSGID`	`2-483`	`-11.500`	`8`	`IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]`
				`351-634`	`-42.400`	`15`	`IDP06043 hypothetical protein jhp0370 [Helicobacter pylori J99] NP_223089 [Helicobacter pylori J99]`
8	`gi\|15644643\|ref\|NP_206812.1\| chaperonin GroEL (HP0010) [Helicobacter pylori 26695]`	`546`	`CSGID`	`1-527`	`-132.000`	`57`	`IDP01497 gene: groEL; chaperonin GroEL VCA0820 [Vibrio cholerae O1 biovar El Tor str. N16961]`
9	`gi\|15644644\|ref\|NP_206813.1\| co-chaperonin GroES (HP0011) [Helicobacter pylori 26695]`	`118`	`CSGID`	`1-91`	`-49.400`	`47`	`IDP01690 gene: groES; chaperonin, 10 kDa [Coxiella burnetii RSA 493] CBU_1719 [Coxiella burnetii RSA 493]`
10	`gi\|15644645\|ref\|NP_206814.1\| DNA primase (HP0012) [Helicobacter pylori 26695]`	`559`	`CSGID`	`1-555`	`-117.000`	`24`	`IDP05233 gene: dnaG; DNA primase [Listeria monocytogenes EGD-e] lmo1455 [Listeria monocytogenes EGD-e]`
11	`gi\|15644646\|ref\|NP_206815.1\| hypothetical protein (HP0013) [Helicobacter pylori 26695]`	`350`	`CSGID`	`2-346`	`-69.400`	`13`	`IDP90692 gene: trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CO92] YPO1638 [Yersinia pestis CO92]`
12	`gi\|15644647\|ref\|NP_206816.1\| hypothetical protein (HP0014) [Helicobacter pylori 26695]`	`275`	`CSGID`	`7-275`	`-12.800`	`13`	`IDP04721 conserved hypothetical protein [Yersinia pestis CO92] YPO1289 [Yersinia pestis CO92]`
13	`gi\|15644648\|ref\|NP_206817.1\| hypothetical protein (HP0015) [Helicobacter pylori 26695]`	`93`	`CSGID`	`14-63`	`-5.410`	`14`	`IDP91727 gene: BCL2L11; bcl-2-like protein 11 isoform 1 [Homo sapiens] NP_619527 [Homo sapiens]`
14	`gi\|15644649\|ref\|NP_206818.1\| hypothetical protein (HP0016) [Helicobacter pylori 26695]`	`87`	`CSGID`	`8-81`	`-6.600`	`19`	`IDP95161 type IV secretory pathway VirB3-4 component [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920281 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]`
15	`gi\|15644650\|ref\|NP_206819.1\| virB4 homolog (virB4) (HP0017) [Helicobacter pylori 26695]`	`787`	`CSGID`	`1-787`	`-140.000`	`17`	`IDP95161 type IV secretory pathway VirB3-4 component [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002920281 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]`
16	`gi\|15644651\|ref\|NP_206820.1\| hypothetical protein (HP0018) [Helicobacter pylori 26695]`	`469`	`CSGID`	`1-188`	`-24.100`	`12`	`IDP05313 putative lipoprotein [Bacillus anthracis str. Ames] BA_1061 [Bacillus anthracis str. Ames]`
				`1-241`	`-18.600`	`11`	`IDP01392 lipoprotein NlpI VC0648 [Vibrio cholerae O1 biovar El Tor str. N16961]`
				`15-378`	`-13.200`	`8`	`IDP90308 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_700 [Chlamydia trachomatis D/UW-3/CX]`
				`34-348`	`-13.600`	`11`	`IDP04095 hypothetical protein [Yersinia pestis CO92] YPO1987 [Yersinia pestis CO92]`
17	`gi\|15644652\|ref\|NP_206821.1\| chemotaxis protein (cheV) (HP0019) [Helicobacter pylori 26695]`	`321`	`CSGID`	`1-321`	`-80.300`	`27`	`IDP00997 putative chemotaxis signal transduction protein STM2314 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
18	`gi\|15644653\|ref\|NP_206822.1\| carboxynorspermidine decarboxylase (nspC) (HP0020) [Helicobacter pylori 26695]`	`405`	`CSGID`	`2-405`	`-84.700`	`15`	`IDP00434 gene: lysA; diaminopimelate decarboxylase YPO0796 [Yersinia pestis CO92]`
19	`gi\|15644654\|ref\|NP_206823.1\| lipid A 1-phosphatase (HP0021) [Helicobacter pylori 26695]`	`190`	`CSGID`	`25-189`	`-64.400`	`25`	`IDP06119 hypothetical protein jhp1487 [Helicobacter pylori J99] NP_224205 [Helicobacter pylori J99]`
20	`gi\|15644655\|ref\|NP_206824.1\| lipid A phosphoethanolamine transferase (HP0022) [Helicobacter pylori 26695]`	`521`	`CSGID`	`184-517`	`-23.200`	`12`	`IDP02230 putative sulfatase [Yersinia pestis CO92] YPO0829 [Yersinia pestis CO92]`