FFAS03 list of results M.genitalium / CSGID

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37] 380 CSGID 1-380 -94.700 21 IDP04571 DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] BAS0002 [Bacillus anthracis str. Sterne]
2 gi|108885076|ref|NP_072662.2| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37] 310 CSGID 2-309 -92.300 20 IDP01653 gene: dnaJ; chaperone protein dnaJ [Bacillus anthracis str. `Ames Ancestor`] GBAA4538 [Bacillus anthracis str. `Ames Ancestor`]
3 gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37] 650 CSGID 2-650 -200.000 53 IDP04572 DNA gyrase subunit B [Bacillus anthracis str. Sterne] BAS0005 [Bacillus anthracis str. Sterne]
4 gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (MG_004) [Mycoplasma genitalium G37] 836 CSGID 14-836 -163.000 45 IDP90834 DNA gyrase, subunit A [Vibrio cholerae O1 biovar eltor str. N16961] VC1258 [Vibrio cholerae O1 biovar El Tor str. N16961]
5 gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37] 417 CSGID 1-411 -131.000 43 IDP90689 gene: serS; seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0389 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
6 gi|12044856|ref|NP_072666.1| thymidylate kinase (MG_006) [Mycoplasma genitalium G37] 210 CSGID 3-209 -86.100 32 IDP90611 gene: tmk; thymidylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2016 [Vibrio cholerae O1 biovar El Tor str. N16961]
7 gi|12044857|ref|NP_072667.1| DNA polymerase III subunit delta' (MG_007) [Mycoplasma genitalium G37] 254 CSGID 2-254 -72.300 19 IDP90891 gene: dnaX; DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] YPO3122 [Yersinia pestis CO92]
8 gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37] 442 CSGID 3-442 -118.000 28 IDP01354 gene: trmE; tRNA modification GTPase TrmE VC0003 [Vibrio cholerae O1 biovar El Tor str. N16961]
9 gi|12044859|ref|NP_072669.1| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37] 262 CSGID 1-261 -102.000 30 IDP00957 gene: ycfH; predicted metallodependent hydrolase STM1202 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
10 gi|12044860|ref|NP_072670.1| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37] 218 CSGID 2-218 -63.400 18 IDP90503 DNA primase [Vibrio cholerae O1 biovar eltor str. N16961] NP_230169 [Vibrio cholerae O1 biovar El Tor str. N16961]
11 gi|12044861|ref|NP_072671.1| hypothetical protein (MG_011) [Mycoplasma genitalium G37] 287 CSGID 6-282 -31.100 14 IDP02693 gene: ddlB; D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis SCHU S4] FTT0185 [Francisella tularensis subsp. tularensis SCHU S4]
12 gi|12044862|ref|NP_072672.1| alpha-L-glutamate ligase (MG_012) [Mycoplasma genitalium G37] 287 CSGID 2-287 -27.800 12 IDP00575 gene: ddl; D-alanine--D-alanine ligase YPO0557 [Yersinia pestis CO92]
13 gi|108885077|ref|NP_072673.2| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37] 273 CSGID 2-267 -106.000 30 IDP90810 gene: folD; folD bifunctional protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0855 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]
14 gi|12044864|ref|NP_072674.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37] 598 CSGID 1-597 -125.000 19 IDP91071 putative ABC transporter, ATP-binding protein [Neisseria gonorrhoeae FA 1090] NGO2165 [Neisseria gonorrhoeae FA 1090]
15 gi|12044865|ref|NP_072675.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37] 564 CSGID 3-564 -140.000 33 IDP91084 ABC transporter, ATP-binding/permease protein [Bacillus anthracis str. Ames] BA_2444 [Bacillus anthracis str. Ames]
16 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] 500 CSGID 58-93 -4.620 13 IDP90175 gene: VGF; CPXV021 protein or CPXV VGF protein AAM13468.1 [Cowpox virus (Brighton Red)]
17 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] 500 CSGID 218-500 -12.600 13 IDP93842 ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp. palearctica Y11] YP_006006418 [Yersinia enterocolitica subsp. palearctica Y11]
262-500 -30.900 30 IDP06036 SNF2 family N-terminal domain-containing protein [Toxoplasma gondii ME49] XP_002371474 [Toxoplasma gondii ME49]
300-500 -39.300 12 IDP06471 gene: E11L; E11L [Monkeypox virus Zaire-96-I-16] NP_536535 [Monkeypox virus Zaire-96-I-16]
18 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] 500 CSGID 54-499 -83.300 16 IDP06471 gene: E11L; E11L [Monkeypox virus Zaire-96-I-16] NP_536535 [Monkeypox virus Zaire-96-I-16]
19 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] 281 CSGID 1-262 -50.600 18 IDP06471 gene: E11L; E11L [Monkeypox virus Zaire-96-I-16] NP_536535 [Monkeypox virus Zaire-96-I-16]
20 gi|12044869|ref|NP_072679.1| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37] 389 CSGID 4-389 -120.000 33 IDP01653 gene: dnaJ; chaperone protein dnaJ [Bacillus anthracis str. `Ames Ancestor`] GBAA4538 [Bacillus anthracis str. `Ames Ancestor`]

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|108885075\|ref\|NP_072661.2\| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37]`	`380`	`CSGID`	`1-380`	`-94.700`	`21`	`IDP04571 DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] BAS0002 [Bacillus anthracis str. Sterne]`
2	`gi\|108885076\|ref\|NP_072662.2\| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37]`	`310`	`CSGID`	`2-309`	`-92.300`	`20`	IDP01653 gene: dnaJ; chaperone protein dnaJ [Bacillus anthracis str. `Ames Ancestor`] GBAA4538 [Bacillus anthracis str. `Ames Ancestor`]
3	`gi\|12044853\|ref\|NP_072663.1\| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37]`	`650`	`CSGID`	`2-650`	`-200.000`	`53`	`IDP04572 DNA gyrase subunit B [Bacillus anthracis str. Sterne] BAS0005 [Bacillus anthracis str. Sterne]`
4	`gi\|12044854\|ref\|NP_072664.1\| DNA gyrase subunit A (MG_004) [Mycoplasma genitalium G37]`	`836`	`CSGID`	`14-836`	`-163.000`	`45`	`IDP90834 DNA gyrase, subunit A [Vibrio cholerae O1 biovar eltor str. N16961] VC1258 [Vibrio cholerae O1 biovar El Tor str. N16961]`
5	`gi\|12044855\|ref\|NP_072665.1\| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37]`	`417`	`CSGID`	`1-411`	`-131.000`	`43`	`IDP90689 gene: serS; seryl-tRNA synthetase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0389 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`
6	`gi\|12044856\|ref\|NP_072666.1\| thymidylate kinase (MG_006) [Mycoplasma genitalium G37]`	`210`	`CSGID`	`3-209`	`-86.100`	`32`	`IDP90611 gene: tmk; thymidylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2016 [Vibrio cholerae O1 biovar El Tor str. N16961]`
7	`gi\|12044857\|ref\|NP_072667.1\| DNA polymerase III subunit delta' (MG_007) [Mycoplasma genitalium G37]`	`254`	`CSGID`	`2-254`	`-72.300`	`19`	`IDP90891 gene: dnaX; DNA polymerase III subunits gamma and tau [Yersinia pestis CO92] YPO3122 [Yersinia pestis CO92]`
8	`gi\|12044858\|ref\|NP_072668.1\| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37]`	`442`	`CSGID`	`3-442`	`-118.000`	`28`	`IDP01354 gene: trmE; tRNA modification GTPase TrmE VC0003 [Vibrio cholerae O1 biovar El Tor str. N16961]`
9	`gi\|12044859\|ref\|NP_072669.1\| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37]`	`262`	`CSGID`	`1-261`	`-102.000`	`30`	`IDP00957 gene: ycfH; predicted metallodependent hydrolase STM1202 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]`
10	`gi\|12044860\|ref\|NP_072670.1\| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37]`	`218`	`CSGID`	`2-218`	`-63.400`	`18`	`IDP90503 DNA primase [Vibrio cholerae O1 biovar eltor str. N16961] NP_230169 [Vibrio cholerae O1 biovar El Tor str. N16961]`
11	`gi\|12044861\|ref\|NP_072671.1\| hypothetical protein (MG_011) [Mycoplasma genitalium G37]`	`287`	`CSGID`	`6-282`	`-31.100`	`14`	`IDP02693 gene: ddlB; D-alanine--D-alanine ligase B [Francisella tularensis subsp. tularensis SCHU S4] FTT0185 [Francisella tularensis subsp. tularensis SCHU S4]`
12	`gi\|12044862\|ref\|NP_072672.1\| alpha-L-glutamate ligase (MG_012) [Mycoplasma genitalium G37]`	`287`	`CSGID`	`2-287`	`-27.800`	`12`	`IDP00575 gene: ddl; D-alanine--D-alanine ligase YPO0557 [Yersinia pestis CO92]`
13	`gi\|108885077\|ref\|NP_072673.2\| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37]`	`273`	`CSGID`	`2-267`	`-106.000`	`30`	`IDP90810 gene: folD; folD bifunctional protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0855 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]`
14	`gi\|12044864\|ref\|NP_072674.1\|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37]`	`598`	`CSGID`	`1-597`	`-125.000`	`19`	`IDP91071 putative ABC transporter, ATP-binding protein [Neisseria gonorrhoeae FA 1090] NGO2165 [Neisseria gonorrhoeae FA 1090]`
15	`gi\|12044865\|ref\|NP_072675.1\|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37]`	`564`	`CSGID`	`3-564`	`-140.000`	`33`	`IDP91084 ABC transporter, ATP-binding/permease protein [Bacillus anthracis str. Ames] BA_2444 [Bacillus anthracis str. Ames]`
16	`gi\|108885078\|ref\|NP_072678.2\| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37]`	`500`	`CSGID`	`58-93`	`-4.620`	`13`	`IDP90175 gene: VGF; CPXV021 protein or CPXV VGF protein AAM13468.1 [Cowpox virus (Brighton Red)]`
17	`gi\|108885078\|ref\|NP_072678.2\| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37]`	`500`	`CSGID`	`218-500`	`-12.600`	`13`	`IDP93842 ATP-dependent DNA helicase RecG [Yersinia enterocolitica subsp. palearctica Y11] YP_006006418 [Yersinia enterocolitica subsp. palearctica Y11]`
				`262-500`	`-30.900`	`30`	`IDP06036 SNF2 family N-terminal domain-containing protein [Toxoplasma gondii ME49] XP_002371474 [Toxoplasma gondii ME49]`
				`300-500`	`-39.300`	`12`	`IDP06471 gene: E11L; E11L [Monkeypox virus Zaire-96-I-16] NP_536535 [Monkeypox virus Zaire-96-I-16]`
18	`gi\|108885078\|ref\|NP_072678.2\| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37]`	`500`	`CSGID`	`54-499`	`-83.300`	`16`	`IDP06471 gene: E11L; E11L [Monkeypox virus Zaire-96-I-16] NP_536535 [Monkeypox virus Zaire-96-I-16]`
19	`gi\|108885078\|ref\|NP_072678.2\| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37]`	`281`	`CSGID`	`1-262`	`-50.600`	`18`	`IDP06471 gene: E11L; E11L [Monkeypox virus Zaire-96-I-16] NP_536535 [Monkeypox virus Zaire-96-I-16]`
20	`gi\|12044869\|ref\|NP_072679.1\| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37]`	`389`	`CSGID`	`4-389`	`-120.000`	`33`	IDP01653 gene: dnaJ; chaperone protein dnaJ [Bacillus anthracis str. `Ames Ancestor`] GBAA4538 [Bacillus anthracis str. `Ames Ancestor`]