FFAS03 list of results M.genitalium / PfamA32U

Shows best template from each database, and all templates with significant scores covering different query fragments

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# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37] 380 PfamA32U 1-120 -43.600 20 PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain
135-256 -39.300 12 PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain
258-380 -52.600 29 PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain
2 gi|108885076|ref|NP_072662.2| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37] 310 PfamA32U 2-61 -35.800 46 PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
121-309 -51.700 10 PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain
3 gi|12044853|ref|NP_072663.1| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37] 650 PfamA32U 39-144 -13.700 18 PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
228-408 -58.000 39 PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B
546-645 -30.000 17 PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM
577-639 -31.100 63 PF00986.21; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus
4 gi|12044854|ref|NP_072664.1| DNA gyrase subunit A (MG_004) [Mycoplasma genitalium G37] 836 PfamA32U 44-477 -61.100 19 PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A
5 gi|12044855|ref|NP_072665.1| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37] 417 PfamA32U 1-104 -29.100 21 PF02403.22; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain
212-394 -13.500 18 PF00587.25; SYT_ECOLI/318-529; tRNA synthetase class II core domain (G, H, P, S and T)
6 gi|12044856|ref|NP_072666.1| thymidylate kinase (MG_006) [Mycoplasma genitalium G37] 210 PfamA32U 9-197 -84.800 34 PF02223.17; KTHY_BACSU/8-199; Thymidylate kinase
7 gi|12044857|ref|NP_072667.1| DNA polymerase III subunit delta' (MG_007) [Mycoplasma genitalium G37] 254 PfamA32U 2-143 -72.100 23 PF13177.6; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit
2-222 -22.800 9 PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)
194-254 -9.830 7 PF12169.8; Q11B01_CHESB/247-389; DNA polymerase III subunits gamma and tau domain III
8 gi|12044858|ref|NP_072668.1| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37] 442 PfamA32U 6-121 -56.500 40 PF10396.9; A4CKF7_ROBBH/5-124; GTP-binding protein TrmE N-terminus
124-439 -82.400 26 PF12631.7; D5XDU4_THEPJ/127-455; MnmE helical domain
9 gi|12044859|ref|NP_072669.1| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37] 262 PfamA32U 4-260 -102.000 29 PF01026.21; Y454_HAEIN/4-256; TatD related DNase
10 gi|12044860|ref|NP_072670.1| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37] 218 PfamA32U 2-106 -40.700 10 PF08275.11; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain
114-201 -42.100 22 PF13155.6; Q8EPY5_OCEIH/263-348; Toprim-like
11 gi|12044861|ref|NP_072671.1| hypothetical protein (MG_011) [Mycoplasma genitalium G37] 287 PfamA32U 9-91 -15.500 9 PF18030.1; D3SB52_THISK/1-94; RimK PreATP-grasp domain
94-273 -68.400 19 PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
12 gi|12044862|ref|NP_072672.1| alpha-L-glutamate ligase (MG_012) [Mycoplasma genitalium G37] 287 PfamA32U 1-87 -14.900 19 PF18030.1; D3SB52_THISK/1-94; RimK PreATP-grasp domain
90-287 -66.500 23 PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain
13 gi|108885077|ref|NP_072673.2| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37] 273 PfamA32U 2-111 -49.500 31 PF00763.23; FOLD_BACSK/6-121; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
114-264 -68.800 23 PF02882.19; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain
14 gi|12044864|ref|NP_072674.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37] 598 PfamA32U 16-296 -11.300 15 PF00664.23; ABCC8_CRICR/318-590; ABC transporter transmembrane region
306-577 -18.600 13 PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
358-517 -29.300 22 PF00005.27; YTFR_ECOLI/25-174; ABC transporter
15 gi|12044865|ref|NP_072675.1|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37] 564 PfamA32U 44-282 -9.910 16 PF00664.23; ABCC8_CRICR/318-590; ABC transporter transmembrane region
284-552 -19.800 13 PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class
343-492 -30.000 28 PF00005.27; YTFR_ECOLI/25-174; ABC transporter
16 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] 500 PfamA32U 45-84 -12.000 42 PF04434.17; Y020_MYCPN/46-86; SWIM zinc finger
17 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] 500 PfamA32U 5-321 -23.900 10 PF08455.10; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated
331-500 -46.100 29 PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
18 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] 500 PfamA32U 81-354 -66.600 28 PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
326-500 -41.600 15 PF16203.5; Q0UAJ3_PHANO/498-753; ERCC3/RAD25/XPB C-terminal helicase
19 gi|108885078|ref|NP_072678.2| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37] 281 PfamA32U 1-104 -18.000 28 PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain
76-281 -48.800 14 PF16203.5; Q0UAJ3_PHANO/498-753; ERCC3/RAD25/XPB C-terminal helicase
20 gi|12044869|ref|NP_072679.1| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37] 389 PfamA32U 7-74 -37.500 52 PF00226.31; Q22028_CAEEL/17-79; DnaJ domain
30-226 -9.660 11 PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)
137-355 -77.900 28 PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain

FFAS is supported by the NIH grant R01-GM087218-01

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#	Query	Length	Result vs.	Range	Score	%id	Covered by template(s)
1	`gi\|108885075\|ref\|NP_072661.2\| DNA polymerase III, beta subunit (MG_001) [Mycoplasma genitalium G37]`	`380`	`PfamA32U`	`1-120`	`-43.600`	`20`	`PF00712.19; DPO3B_CAUVC/1-121; DNA polymerase III beta subunit, N-terminal domain`
				`135-256`	`-39.300`	`12`	`PF02767.16; DPO3B_PSEPK/129-244; DNA polymerase III beta subunit, central domain`
				`258-380`	`-52.600`	`29`	`PF02768.15; DPO3B_BACSU/253-376; DNA polymerase III beta subunit, C-terminal domain`
2	`gi\|108885076\|ref\|NP_072662.2\| DnaJ domain-containing protein (MG_002) [Mycoplasma genitalium G37]`	`310`	`PfamA32U`	`2-61`	`-35.800`	`46`	`PF00226.31; Q22028_CAEEL/17-79; DnaJ domain`
				`121-309`	`-51.700`	`10`	`PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain`
3	`gi\|12044853\|ref\|NP_072663.1\| DNA gyrase subunit B (MG_003) [Mycoplasma genitalium G37]`	`650`	`PfamA32U`	`39-144`	`-13.700`	`18`	`PF13589.6; A5G4D8_GEOUR/22-165; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase`
				`228-408`	`-58.000`	`39`	`PF00204.25; A9KS52_LACP7/226-396; DNA gyrase B`
				`546-645`	`-30.000`	`17`	`PF16898.5; K5XBZ3_PHACS/641-767; C-terminal associated domain of TOPRIM`
				`577-639`	`-31.100`	`63`	`PF00986.21; M9X0E0_MANHA/738-800; DNA gyrase B subunit, carboxyl terminus`
4	`gi\|12044854\|ref\|NP_072664.1\| DNA gyrase subunit A (MG_004) [Mycoplasma genitalium G37]`	`836`	`PfamA32U`	`44-477`	`-61.100`	`19`	`PF00521.20; A0A0D1DXS4_USTMA/785-1232; DNA gyrase/topoisomerase IV, subunit A`
5	`gi\|12044855\|ref\|NP_072665.1\| seryl-tRNA synthetase (MG_005) [Mycoplasma genitalium G37]`	`417`	`PfamA32U`	`1-104`	`-29.100`	`21`	`PF02403.22; C5WTV8_SORBI/1-114; Seryl-tRNA synthetase N-terminal domain`
				`212-394`	`-13.500`	`18`	`PF00587.25; SYT_ECOLI/318-529; tRNA synthetase class II core domain (G, H, P, S and T)`
6	`gi\|12044856\|ref\|NP_072666.1\| thymidylate kinase (MG_006) [Mycoplasma genitalium G37]`	`210`	`PfamA32U`	`9-197`	`-84.800`	`34`	`PF02223.17; KTHY_BACSU/8-199; Thymidylate kinase`
7	`gi\|12044857\|ref\|NP_072667.1\| DNA polymerase III subunit delta' (MG_007) [Mycoplasma genitalium G37]`	`254`	`PfamA32U`	`2-143`	`-72.100`	`23`	`PF13177.6; A5VIC8_LACRD/13-171; DNA polymerase III, delta subunit`
				`2-222`	`-22.800`	`9`	`PF05673.13; Q0K6N5_CUPNH/29-287; Protein of unknown function (DUF815 topsan)`
				`194-254`	`-9.830`	`7`	`PF12169.8; Q11B01_CHESB/247-389; DNA polymerase III subunits gamma and tau domain III`
8	`gi\|12044858\|ref\|NP_072668.1\| tRNA modification GTPase TrmE (MG_008) [Mycoplasma genitalium G37]`	`442`	`PfamA32U`	`6-121`	`-56.500`	`40`	`PF10396.9; A4CKF7_ROBBH/5-124; GTP-binding protein TrmE N-terminus`
				`124-439`	`-82.400`	`26`	`PF12631.7; D5XDU4_THEPJ/127-455; MnmE helical domain`
9	`gi\|12044859\|ref\|NP_072669.1\| TatD family deoxyribonuclease (MG_009) [Mycoplasma genitalium G37]`	`262`	`PfamA32U`	`4-260`	`-102.000`	`29`	`PF01026.21; Y454_HAEIN/4-256; TatD related DNase`
10	`gi\|12044860\|ref\|NP_072670.1\| DNA primase-related protein (MG_010) [Mycoplasma genitalium G37]`	`218`	`PfamA32U`	`2-106`	`-40.700`	`10`	`PF08275.11; Q8F416_LEPIN/119-248; DNA primase catalytic core, N-terminal domain`
				`114-201`	`-42.100`	`22`	`PF13155.6; Q8EPY5_OCEIH/263-348; Toprim-like`
11	`gi\|12044861\|ref\|NP_072671.1\| hypothetical protein (MG_011) [Mycoplasma genitalium G37]`	`287`	`PfamA32U`	`9-91`	`-15.500`	`9`	`PF18030.1; D3SB52_THISK/1-94; RimK PreATP-grasp domain`
				`94-273`	`-68.400`	`19`	`PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain`
12	`gi\|12044862\|ref\|NP_072672.1\| alpha-L-glutamate ligase (MG_012) [Mycoplasma genitalium G37]`	`287`	`PfamA32U`	`1-87`	`-14.900`	`19`	`PF18030.1; D3SB52_THISK/1-94; RimK PreATP-grasp domain`
				`90-287`	`-66.500`	`23`	`PF08443.11; RIMK_HAEIN/105-293; RimK-like ATP-grasp domain`
13	`gi\|108885077\|ref\|NP_072673.2\| methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase (MG_013) [Mycoplasma genitalium G37]`	`273`	`PfamA32U`	`2-111`	`-49.500`	`31`	`PF00763.23; FOLD_BACSK/6-121; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain`
				`114-264`	`-68.800`	`23`	`PF02882.19; FOLD1_ARATH/184-349; Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain`
14	`gi\|12044864\|ref\|NP_072674.1\|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_014) [Mycoplasma genitalium G37]`	`598`	`PfamA32U`	`16-296`	`-11.300`	`15`	`PF00664.23; ABCC8_CRICR/318-590; ABC transporter transmembrane region`
				`306-577`	`-18.600`	`13`	`PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class`
				`358-517`	`-29.300`	`22`	`PF00005.27; YTFR_ECOLI/25-174; ABC transporter`
15	`gi\|12044865\|ref\|NP_072675.1\|(removed signalp:1-25) ABC transporter, ATP-binding/permease protein (MG_015) [Mycoplasma genitalium G37]`	`564`	`PfamA32U`	`44-282`	`-9.910`	`16`	`PF00664.23; ABCC8_CRICR/318-590; ABC transporter transmembrane region`
				`284-552`	`-19.800`	`13`	`PF09818.9; Q10V01_TRIEI/4-493; Predicted ATPase of the ABC class`
				`343-492`	`-30.000`	`28`	`PF00005.27; YTFR_ECOLI/25-174; ABC transporter`
16	`gi\|108885078\|ref\|NP_072678.2\| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37]`	`500`	`PfamA32U`	`45-84`	`-12.000`	`42`	`PF04434.17; Y020_MYCPN/46-86; SWIM zinc finger`
17	`gi\|108885078\|ref\|NP_072678.2\| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37]`	`500`	`PfamA32U`	`5-321`	`-23.900`	`10`	`PF08455.10; R4KHE0_9FIRM/244-621; Bacterial SNF2 helicase associated`
				`331-500`	`-46.100`	`29`	`PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain`
18	`gi\|108885078\|ref\|NP_072678.2\| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37]`	`500`	`PfamA32U`	`81-354`	`-66.600`	`28`	`PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain`
				`326-500`	`-41.600`	`15`	`PF16203.5; Q0UAJ3_PHANO/498-753; ERCC3/RAD25/XPB C-terminal helicase`
19	`gi\|108885078\|ref\|NP_072678.2\| SNF2 family helicase putative (MG_018) [Mycoplasma genitalium G37]`	`281`	`PfamA32U`	`1-104`	`-18.000`	`28`	`PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain`
				`76-281`	`-48.800`	`14`	`PF16203.5; Q0UAJ3_PHANO/498-753; ERCC3/RAD25/XPB C-terminal helicase`
20	`gi\|12044869\|ref\|NP_072679.1\| chaperone protein DnaJ (MG_019) [Mycoplasma genitalium G37]`	`389`	`PfamA32U`	`7-74`	`-37.500`	`52`	`PF00226.31; Q22028_CAEEL/17-79; DnaJ domain`
				`30-226`	`-9.660`	`11`	`PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)`
				`137-355`	`-77.900`	`28`	`PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain`